| System: | iScan, BeadStation, BeadArray Reader, HiScanSQ |
|---|---|
| Technology: | BeadArray |
| Assay: | Infinium DNA Analysis Assay |
| Applications: | Focused Genotyping |
| Contents: | Each package contains 2 to 48 BeadChips, along with reagents for amplifying, fragmenting, hybridizing, labeling, and detecting 48 to 1152 samples |
The MaizeSNP50 Genotyping BeadChip offers a cost-effective and high-quality genotyping solution for researchers conducting genome-wide association studies in maize. The BeadChip contains 56,110 validated single nucleotide polymorphism (SNP) probes derived from the B73 reference sequence. Illumina developed the BeadChip in collaboration with TraitGenetics, The French Institute for Agricultural Research (INRA), and Syngenta, with the SNP content selected from several public and private sources.
The highly polymorphic SNP content on the MaizeSNP50 was subjected to rigorous functional testing across over 30 diverse maize lines to ensure strong performance. Importantly, this BeadChip presents an average of greater than 25 markers per megabase (Mb), providing ample SNP density for robust whole-genome genotyping studies. In addition, the MaizeSNP50 marker set increases the ability to perform genetic mapping and marker assisted breeding.
The MaizeSNP50 BeadChip is powered by the proven Infinium® HD Assay, that provides the industry's highest call rates and allows for flexible content deployment.
Focused genotyping supports a variety of applications such as candidate-gene studies in cancer, cardiovascular disease, and admixture mapping. Illumina also works closely with major animal consortia to develop genome-wide genotyping products for non-human organisms, including both animal and plant species.
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