At Illumina, we enjoy seeing how researchers are successfully using our products for a wide range of genetic analysis applications. We are proud to share this list of publications from the growing community of Illumina customers, collaborators, and internal scientists. If we missed one, please send the citation to publications@illumina.com.

Title Authors Source Year
Homozygous Mutations in the 5 Region of the JUP Gene Result in Cutaneous Disease but Normal Heart Development in Children. Rita M Cabral, Lu Liu, Carol Hogan, Patricia J C Dopping-Hepenstal, Beatriz C Winik, Raúl A Asial, Richard Dobson, Charles A Mein, Patricia A Baselaga, Jemima E Mellerio, Arti Nanda, Maria Del Carmen Boente, David P Kelsell, John A McGrath, Andrew P South J Invest Dermatol 2010
Principles and challenges of genome-wide DNA methylation analysis. Peter W Laird Nat Rev Genet 11 191-203 2010
Prostate cancer genes associated with TMPRSS2-ERG gene fusion and prognostic of biochemical recurrence in multiple cohorts. B G Barwick, M Abramovitz, M Kodani, C S Moreno, R Nam, W Tang, M Bouzyk, A Seth, B Leyland-Jones Br J Cancer 102 570-6 2010
FRT-seq: amplification-free, strand-specific transcriptome sequencing. Lira Mamanova, Robert M Andrews, Keith D James, Elizabeth M Sheridan, Peter D Ellis, Cordelia F Langford, Tobias W B Ost, John E Collins, Daniel J Turner Nat Methods 7 130-2 2010
Parallel, tag-directed assembly of locally derived short sequence reads. Joseph B Hiatt, Rupali P Patwardhan, Emily H Turner, Choli Lee, Jay Shendure Nat Methods 7 119-22 2010
Genome-scale DNA methylation mapping of clinical samples at single-nucleotide resolution. Hongcang Gu, Christoph Bock, Tarjei S Mikkelsen, Natalie Jäger, Zachary D Smith, Eleni Tomazou, Andreas Gnirke, Eric S Lander, Alexander Meissner Nat Methods 7 133-6 2010
Defining transcribed regions using RNA-seq. Brian T Wilhelm, Samuel Marguerat, Ian Goodhead, Jürg Bähler Nat Protoc 5 255-66 2010
Mind the gaps. Steven L Salzberg Nat Methods 7 105-6 2010
Preclinical validation of a microarray method for full molecular karyotyping of blastomeres in a 24-h protocol. D S Johnson, G Gemelos, J Baner, A Ryan, C Cinnioglu, M Banjevic, R Ross, M Alper, B Barrett, J Frederick, D Potter, B Behr, M Rabinowitz Hum Reprod 2010
Population resequencing reveals local adaptation of Arabidopsis lyrata to serpentine soils. Thomas L Turner, Elizabeth C Bourne, Eric J Von Wettberg, Tina T Hu, Sergey V Nuzhdin Nat Genet 42 260-3 2010
Evolution of MRSA during hospital transmission and intercontinental spread. Simon R Harris, Edward J Feil, Matthew T G Holden, Michael A Quail, Emma K Nickerson, Narisara Chantratita, Susana Gardete, Ana Tavares, Nick Day, Jodi A Lindsay, Jonathan D Edgeworth, Hermínia de Lencastre, Julian Parkhill, Sharon J Peacock, Stephen D Bentley Science 327 469-74 2010
Genetics: Decoding a national treasure. Kim C Worley, Richard A Gibbs Nature 463 303-4 2010
The transcriptional network for mesenchymal transformation of brain tumours. Maria Stella Carro, Wei Keat Lim, Mariano Javier Alvarez, Robert J Bollo, Xudong Zhao, Evan Y Snyder, Erik P Sulman, Sandrine L Anne, Fiona Doetsch, Howard Colman, Anna Lasorella, Ken Aldape, Andrea Califano, Antonio Iavarone Nature 463 318-25 2010
The genetic map of Artemisia annua L. identifies loci affecting yield of the antimalarial drug artemisinin. Ian A Graham, Katrin Besser, Susan Blumer, Caroline A Branigan, Tomasz Czechowski, Luisa Elias, Inna Guterman, David Harvey, Peter G Isaac, Awais M Khan, Tony R Larson, Yi Li, Tanya Pawson, Teresa Penfield, Anne M Rae, Deborah A Rathbone, Sonja Reid, Joe Ross, Margaret F Smallwood, Vincent Segura, Theresa Townsend, Darshna Vyas, Thilo Winzer, Dianna Bowles Science 327 328-31 2010
Functional and evolutionary insights from the genomes of three parasitoid Nasonia species.    , John H Werren, Stephen Richards, Christopher A Desjardins, Oliver Niehuis, Jürgen Gadau, John K Colbourne, Leo W Beukeboom, Claude Desplan, Christine G Elsik, Cornelis J P Grimmelikhuijzen, Paul Kitts, Jeremy A Lynch, Terence Murphy, Deodoro C S G Oliveira, Christopher D Smith, Louis van de Zande, Kim C Worley, Evgeny M Zdobnov, Maarten Aerts, Stefan Albert, Victor H Anaya, Juan M Anzola, Angel R Barchuk, Susanta K Behura, Agata N Bera, May R Berenbaum, Rinaldo C Bertossa, Márcia M G Bitondi, Seth R Bordenstein, Peer Bork, Erich Bornberg-Bauer, Marleen Brunain, Giuseppe Cazzamali, Lesley Chaboub, Joseph Chacko, Dean Chavez, Christopher P Childers, Jeong-Hyeon Choi, Michael E Clark, Charles Claudianos, Rochelle A Clinton, Andrew G Cree, Alexandre S Cristino, Phat M Dang, Alistair C Darby, Dirk C de Graaf, Bart Devreese, Huyen H Dinh, Rachel Edwards, Navin Elango, Eran Elhaik, Olga Ermolaeva, Jay D Evans, Sylvain Foret, Gerald R Fowler, Daniel Gerlach, Joshua D Gibson, Do Science 327 343-8 2010
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