At Illumina, we enjoy seeing how researchers are successfully using our products for a wide range of genetic analysis applications. We are proud to share this list of publications from the growing community of Illumina customers, collaborators, and internal scientists. If we missed one, please send the citation to publications@illumina.com.

Title Authors Source Year
Big defensins and mytimacins, new AMP families of the Mediterranean mussel Mytilus galloprovincialis. Marco Gerdol, Gianluca De Moro, Chiara Manfrin, Paola Venier, Alberto Pallavicini Dev Comp Immunol 36 390-9 2012
Advancing the Omics in aquatic toxicology: SETAC North America 31st Annual Meeting. Nancy D Denslow, Robert J Griffitt, Christopher J Martyniuk Ecotoxicol Environ Saf 76 1-2 2012
Repetitive DNA and next-generation sequencing: computational challenges and solutions. Todd J Treangen, Steven L Salzberg Nat Rev Genet 13 36-46 2012
Transposase mediated construction of RNA-seq libraries. Jason Gertz, Katherine E Varley, Nicholas S Davis, Bradley J Baas, Igor Y Goryshin, Ramesh Vaidyanathan, Scott Kuersten, Richard M Myers Genome Res 22 134-41 2012
Dont give up on GWAS. P Sullivan Mol Psychiatry 17 2-3 2012
Quantitative analysis of 5HT(2C) receptor RNA editing patterns in psychiatric disorders. Richard T ONeil, Ronald B Emeson Neurobiol Dis 45 8-13 2012
Association between variants in IDE-KIF11-HHEX and plasma amyloid ß levels. Christiane Reitz, Rong Cheng, Nicole Schupf, Joseph H Lee, Pankaj D Mehta, Ekaterina Rogaeva, Peter St George-Hyslop, Richard Mayeux Neurobiol Aging 33 199.e13-7 2012
Characterising chromosome rearrangements: recent technical advances in molecular cytogenetics. S Le Scouarnec, S M Gribble Heredity (Edinb) 108 75-85 2012
Characterization of telomeres and telomerase expression in Xiphophorus. Kevin P Downs, Yingjia Shen, Amanda Pasquali, Ion Beldorth, Markita Savage, Katelyn Gallier, Tzintzuni Garcia, Rachell E Booth, Ronald B Walter Comp Biochem Physiol C Toxicol Pharmacol 155 89-94 2012
Design and analytical validation of clinical DNA sequencing assays. Genevieve Pont-Kingdon, Friederike Gedge, Whitney Wooderchak-Donahue, Iris Schrijver, Karen E Weck, Jeffrey A Kant, Devin Oglesbee, Pinar Bayrak-Toydemir, Elaine Lyon Arch Pathol Lab Med 136 41-6 2012
Effects of short read quality and quantity on a de novo vertebrate transcriptome assembly. T I Garcia, Y Shen, J Catchen, A Amores, M Schartl, J Postlethwait, R B Walter Comp Biochem Physiol C Toxicol Pharmacol 155 95-101 2012
Identification of transcriptome SNPs between Xiphophorus lines and species for assessing allele specific gene expression within F(1) interspecies hybrids. Yingjia Shen, Julian Catchen, Tzintzuni Garcia, Angel Amores, Ion Beldorth, Jonathan Wagner, Ziping Zhang, John Postlethwait, Wes Warren, Manfred Schartl, Ronald B Walter Comp Biochem Physiol C Toxicol Pharmacol 155 102-8 2012
Using VAAST to identify an X-linked disorder resulting in lethality in male infants due to N-terminal acetyltransferase deficiency. Alan F Rope, Kai Wang, Rune Evjenth, Jinchuan Xing, Jennifer J Johnston, Jeffrey J Swensen, W Evan Johnson, Barry Moore, Chad D Huff, Lynne M Bird, John C Carey, John M Opitz, Cathy A Stevens, Tao Jiang, Christa Schank, Heidi Deborah Fain, Reid Robison, Brian Dalley, Steven Chin, Sarah T South, Theodore J Pysher, Lynn B Jorde, Hakon Hakonarson, Johan R Lillehaug, Leslie G Biesecker, Mark Yandell, Thomas Arnesen, Gholson J Lyon Am J Hum Genet 89 28-43 2011
The activity level of a microbial community function can be predicted from its metatranscriptome. Damian E Helbling, Martin Ackermann, Kathrin Fenner, Hans-Peter E Kohler, David R Johnson ISME J 2011
Functionally recurrent rearrangements of the MAST kinase and Notch gene families in breast cancer. Dan R Robinson, Shanker Kalyana-Sundaram, Yi-Mi Wu, Sunita Shankar, Xuhong Cao, Bushra Ateeq, Irfan A Asangani, Matthew Iyer, Christopher A Maher, Catherine S Grasso, Robert J Lonigro, Michael Quist, Javed Siddiqui, Rohit Mehra, Xiaojun Jing, Thomas J Giordano, Michael S Sabel, Celina G Kleer, Nallasivam Palanisamy, Rachael Natrajan, Maryou B Lambros, Jorge S Reis-Filho, Chandan Kumar-Sinha, Arul M Chinnaiyan Nat Med 17 1646-51 2011
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