At Illumina, we enjoy seeing how researchers are successfully using our products for a wide range of genetic analysis applications. We are proud to share this list of publications from the growing community of Illumina customers, collaborators, and internal scientists. If we missed one, please send the citation to publications@illumina.com.

Title Authors Source Year
Regulation of MicroRNA Expression and Abundance during Lymphopoiesis Stefan Kuchen, Wolfgang Resch, Arito Yamane, Nan Kuo, Zhiyu Li, Tirtha Chakraborty, Lai Wei, Arian Laurence, Tomoharu Yasuda, Siying Peng, Jane Hu-Li, Kristina Lu, Wendy Dubois, Yoshiaki Kitamura, Nicolas Charles, Hong-wei Sun, Stefan Muljo, Pamela L Schwartzberg, William E Paul, John OShea, Klaus Rajewsky, Rafael Casellas Immunity
Microbes and Health Sackler Colloquium: Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. J Gregory Caporaso, Christian L Lauber, William A Walters, Donna Berg-Lyons, Catherine A Lozupone, Peter J Turnbaugh, Noah Fierer, Rob Knight Proc Natl Acad Sci U S A 2010
mRNA-seq with agnostic splice site discovery for nervous system transcriptomics tested in chronic pain. Paul Hammer, Michaela S Banck, Ronny Amberg, Cheng Wang, Gabriele Petznick, Shujun Luo, Irina Khrebtukova, Gary P Schroth, Peter Beyerlein, Andreas S Beutler Genome Res 20 847-60 2010
The genome sequence of the spontaneously hypertensive rat: Analysis and functional significance. Santosh S Atanur, Inan? Birol, Victor Guryev, Martin Hirst, Oliver Hummel, Catherine Morrissey, Jacques Behmoaras, Xose M Fernandez-Suarez, Michelle D Johnson, William M McLaren, Giannino Patone, Enrico Petretto, Charles Plessy, Kathleen S Rockland, Charles Rockland, Kathrin Saar, Yongjun Zhao, Piero Carninci, Paul Flicek, Ted Kurtz, Edwin Cuppen, Michal Pravenec, Norbert Hubner, Steven J M Jones, Ewan Birney, Timothy J Aitman Genome Res 20 791-803 2010
Allele-specific methylation is prevalent and is contributed by CpG-SNPs in the human genome. Robert Shoemaker, Jie Deng, Wei Wang, Kun Zhang Genome Res 2010
A three-dimensional model of the yeast genome. Zhijun Duan, Mirela Andronescu, Kevin Schutz, Sean McIlwain, Yoo Jung Kim, Choli Lee, Jay Shendure, Stanley Fields, C Anthony Blau, William S Noble Nature 465 363-7 2010
An endogenous, systemic RNAi pathway in plants. Patrice Dunoyer, Christopher A Brosnan, Gregory Schott, Yu Wang, Florence Jay, Abdelmalek Alioua, Christophe Himber, Olivier Voinnet EMBO J 29 1699-712 2010
DNA methylation mediated by a microRNA pathway. Liang Wu, Huanyu Zhou, Qingqing Zhang, Jianguang Zhang, Fangrui Ni, Chang Liu, Yijun Qi Mol Cell 38 465-75 2010
Developmental regulation and individual differences of neuronal H3K4me3 epigenomes in the prefrontal cortex. Iris Cheung, Hennady P Shulha, Yan Jiang, Anouch Matevossian, Jie Wang, Zhiping Weng, Schahram Akbarian Proc Natl Acad Sci U S A 107 8824-9 2010
Deep sequencing analysis of viruses infecting grapevines: Virome of a vineyard. Beatrix Coetzee, Michael-John Freeborough, Hans J Maree, Jean-Marc Celton, D Jasper G Rees, Johan T Burger Virology 400 157-63 2010
Genome analysis of Moraxella catarrhalis strain RH4: a human respiratory tract pathogen. Stefan P W de Vries, Sacha A F T van Hijum, Wolfgang Schueler, Kristian Riesbeck, John P Hays, Peter W M Hermans, Hester J Bootsma J Bacteriol 2010
Dynamic regulation of alternative splicing and chromatin structure in Drosophila gonads revealed by RNA-seq. Qiang Gan, Iouri Chepelev, Gang Wei, Lama Tarayrah, Kairong Cui, Keji Zhao, Xin Chen Cell Res 2010
Genomic Analysis of miRNAs in an Extreme Mammalian Hibernator, the Arctic Ground Squirrel. Yuting Liu, Wenchao Hu, Haifang Wang, Minghua Lu, Chunxuan Shao, Corinna Menzel, Zheng Yan, Ying Li, Sen Zhao, Philipp Khaitovich, Mofang Liu, Wei Chen, Brian M Barnes, Jun Yan Physiol Genomics 2010
Cooperation between the transcription factors p63 and IRF6 is essential to prevent cleft palate in mice. Helen A Thomason, Huiqing Zhou, Evelyn N Kouwenhoven, Gian-Paolo Dotto, Gaia Restivo, Bach-Cuc Nguyen, Hayley Little, Michael J Dixon, Hans van Bokhoven, Jill Dixon J Clin Invest 120 1561-9 2010
Single base-resolution methylome of the silkworm reveals a sparse epigenomic map. Hui Xiang, Jingde Zhu, Quan Chen, Fangyin Dai, Xin Li, Muwang Li, Hongyu Zhang, Guojie Zhang, Dong Li, Yang Dong, Li Zhao, Ying Lin, Daojun Cheng, Jian Yu, Jinfeng Sun, Xiaoyu Zhou, Kelong Ma, Yinghua He, Yangxing Zhao, Shicheng Guo, Mingzhi Ye, Guangwu Guo, Yingrui Li, Ruiqiang Li, Xiuqing Zhang, Lijia Ma, Karsten Kristiansen, Qiuhong Guo, Jianhao Jiang, Stephan Beck, Qingyou Xia, Wen Wang, Jun Wang Nat Biotechnol 28 516-20 2010
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