At Illumina, we enjoy seeing how researchers are successfully using our products for a wide range of genetic analysis applications. We are proud to share this list of publications from the growing community of Illumina customers, collaborators, and internal scientists. If we missed one, please send the citation to publications@illumina.com.

Title Authors Source Year
MEK1 mutations confer resistance to MEK and B-RAF inhibition. Caroline M Emery, Krishna G Vijayendran, Marie C Zipser, Allison M Sawyer, Lili Niu, Jessica J Kim, Charles Hatton, Rajiv Chopra, Patrick A Oberholzer, Maria B Karpova, Laura E MacConaill, Jianming Zhang, Nathanael S Gray, William R Sellers, Reinhard Dummer, Levi A Garraway Proc Natl Acad Sci U S A 106 20411-6 2009
Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression. Yong Cheng, Weisheng Wu, Swathi Ashok Kumar, Duonan Yu, Wulan Deng, Tamara Tripic, David C King, Kuan-Bei Chen, Ying Zhang, Daniela Drautz, Belinda Giardine, Stephan C Schuster, Webb Miller, Francesca Chiaromonte, Yu Zhang, Gerd A Blobel, Mitchell J Weiss, Ross C Hardison Genome Res 19 2172-84 2009
Confirmation of the Sequence of Candidatus Liberibacter asiaticus and Assessment of Microbial Diversity in Huanglongbing-Infected Citrus Phloem Using a Metagenomic Approach. Heather L Tyler, Luiz F W Roesch, Siddarame Gowda, William O Dawson, Eric W Triplett Mol Plant Microbe Interact 22 1624-34 2009
Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants. Gemma C Langridge, Minh-Duy Phan, Daniel J Turner, Timothy T Perkins, Leopold Parts, Jana Haase, Ian Charles, Duncan J Maskell, Sarah E Peters, Gordon Dougan, John Wain, Julian Parkhill, A Keith Turner Genome Res 19 2308-16 2009
The human retinoblastoma gene is imprinted. Deniz Kanber, Tea Berulava, Ole Ammerpohl, Diana Mitter, Julia Richter, Reiner Siebert, Bernhard Horsthemke, Dietmar Lohmann, Karin Buiting PLoS Genet 5 e1000790 2009
The TDRD9-MIWI2 complex is essential for piRNA-mediated retrotransposon silencing in the mouse male germline. Masanobu Shoji, Takashi Tanaka, Mihoko Hosokawa, Michael Reuter, Alexander Stark, Yuzuru Kato, Gen Kondoh, Katsuya Okawa, Takeshi Chujo, Tsutomu Suzuki, Kenichiro Hata, Sandra L Martin, Toshiaki Noce, Satomi Kuramochi-Miyagawa, Toru Nakano, Hiroyuki Sasaki, Ramesh S Pillai, Norio Nakatsuji, Shinichiro Chuma Dev Cell 17 775-87 2009
Prp43 bound at different sites on the pre-rRNA performs distinct functions in ribosome synthesis. Markus T Bohnsack, Roman Martin, Sander Granneman, Maike Ruprecht, Enrico Schleiff, David Tollervey Mol Cell 36 583-92 2009
Discovering hematopoietic mechanisms through genome-wide analysis of GATA factor chromatin occupancy. Tohru Fujiwara, Henriette OGeen, Sunduz Keles, Kimberly Blahnik, Amelia K Linnemann, Yoon-A Kang, Kyunghee Choi, Peggy J Farnham, Emery H Bresnick Mol Cell 36 667-81 2009
RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex. Caryn R Hale, Peng Zhao, Sara Olson, Michael O Duff, Brenton R Graveley, Lance Wells, Rebecca M Terns, Michael P Terns Cell 139 945-56 2009
Use of high throughput sequencing to observe genome dynamics at a single cell level. D Parkhomchuk, V Amstislavskiy, A Soldatov, V Ogryzko Proc Natl Acad Sci U S A 2009
Recent human-to-poultry host jump, adaptation, and pandemic spread of Staphylococcus aureus. Bethan V Lowder, Caitriona M Guinane, Nouri L Ben Zakour, Lucy A Weinert, Andrew Conway-Morris, Robyn A Cartwright, A John Simpson, Andrew Rambaut, Ulrich Nübel, J Ross Fitzgerald Proc Natl Acad Sci U S A 106 19545-50 2009
Exome sequencing identifies the cause of a mendelian disorder. Sarah B Ng, Kati J Buckingham, Choli Lee, Abigail W Bigham, Holly K Tabor, Karin M Dent, Chad D Huff, Paul T Shannon, Ethylin Wang Jabs, Deborah A Nickerson, Jay Shendure, Michael J Bamshad Nat Genet 42 30-5 2010
Hierarchical rules for Argonaute loading in Drosophila. Benjamin Czech, Rui Zhou, Yaniv Erlich, Julius Brennecke, Richard Binari, Christians Villalta, Assaf Gordon, Norbert Perrimon, Gregory J Hannon Mol Cell 36 445-56 2009
MBD-isolated Genome Sequencing provides a high-throughput and comprehensive survey of DNA methylation in the human genome. David Serre, Byron H Lee, Angela H Ting Nucleic Acids Res 38 391-9 2010
Sequences of complete human cytomegalovirus genomes from infected cell cultures and clinical specimens. Charles Cunningham, Derek Gatherer, Birgitta Hilfrich, Katarina Baluchova, Derrick J Dargan, Marian Thomson, Paul D Griffiths, Gavin W G Wilkinson, Thomas F Schulz, Andrew J Davison J Gen Virol 91 605-15 2010
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