At Illumina, we enjoy seeing how researchers are successfully using our products for a wide range of genetic analysis applications. We are proud to share this list of publications from the growing community of Illumina customers, collaborators, and internal scientists. If we missed one, please send the citation to publications@illumina.com.

Title Authors Source Year
Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes. Zhibin Wang, Chongzhi Zang, Kairong Cui, Dustin E Schones, Artem Barski, Weiqun Peng, Keji Zhao Cell 138 1019-31 2009
Deep sequencing to reveal new variants in pooled DNA samples. Astrid A Out, Ivonne J H M van Minderhout, Jelle J Goeman, Yavuz Ariyurek, Stephan Ossowski, Korbinian Schneeberger, Detlef Weigel, Michiel van Galen, Peter E M Taschner, Carli M J Tops, Martijn H Breuning, Gert-Jan B van Ommen, Johan T den Dunnen, Peter Devilee, Frederik J Hes Hum Mutat 30 1703-12 2009
Zcchc11-dependent uridylation of microRNA directs cytokine expression. Matthew R Jones, Lee J Quinton, Matthew T Blahna, Joel R Neilson, Suneng Fu, Alexander R Ivanov, Dieter A Wolf, Joseph P Mizgerd Nat Cell Biol 11 1157-63 2009
Next-generation sequencing technologies and their implications for crop genetics and breeding. Rajeev K Varshney, Spurthi N Nayak, Gregory D May, Scott A Jackson Trends Biotechnol 27 522-30 2009
From small reads do mighty genomes grow. Nicholas J Croucher Nat Rev Microbiol 7 621 2009
BreakDancer: an algorithm for high-resolution mapping of genomic structural variation. Ken Chen, John W Wallis, Michael D McLellan, David E Larson, Joelle M Kalicki, Craig S Pohl, Sean D McGrath, Michael C Wendl, Qunyuan Zhang, Devin P Locke, Xiaoqi Shi, Robert S Fulton, Timothy J Ley, Richard K Wilson, Li Ding, Elaine R Mardis Nat Methods 6 677-81 2009
GASZ is essential for male meiosis and suppression of retrotransposon expression in the male germline. Lang Ma, Gregory M Buchold, Michael P Greenbaum, Angshumoy Roy, Kathleen H Burns, Huifeng Zhu, Derek Y Han, R Alan Harris, Cristian Coarfa, Preethi H Gunaratne, Wei Yan, Martin M Matzuk PLoS Genet 5 e1000635 2009
Genetic diversity of the pneumococcal capsule: implications for molecular-based serotyping. Mary Catherine McEllistrem Future Microbiol 4 857-65 2009
Evolution of vault RNAs. Peter F Stadler, Julian J-L Chen, Jörg Hackermüller, Steve Hoffmann, Friedemann Horn, Phillip Khaitovich, Antje K Kretzschmar, Axel Mosig, Sonja J Prohaska, Xiaodong Qi, Katharina Schutt, Kerstin Ullmann Mol Biol Evol 26 1975-91 2009
Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae. Summary Jongsik Chun, Christopher J Grim, Nur A Hasan, Je Hee Lee, Seon Young Choi, Bradd J Haley, Elisa Taviani, Yoon-Seong Jeon, Dong Wook Kim, Jae-Hak Lee, Thomas S Brettin, David C Bruce, Jean F Challacombe, J Chris Detter, Cliff S Han, A Christine Munk, Olga Chertkov, Linda Meincke, Elizabeth Saunders, Ronald A Walters, Anwar Huq, G Balakrish Nair, Rita R Colwell Proc Natl Acad Sci U S A 106 15442-7 2009
Personalized copy number and segmental duplication maps using next-generation sequencing. Can Alkan, Jeffrey M Kidd, Tomas Marques-Bonet, Gozde Aksay, Francesca Antonacci, Fereydoun Hormozdiari, Jacob O Kitzman, Carl Baker, Maika Malig, Onur Mutlu, S Cenk Sahinalp, Richard A Gibbs, Evan E Eichler Nat Genet 41 1061-7 2009
Complete resequencing of 40 genomes reveals domestication events and genes in silkworm (Bombyx). Qingyou Xia, Yiran Guo, Ze Zhang, Dong Li, Zhaoling Xuan, Zhuo Li, Fangyin Dai, Yingrui Li, Daojun Cheng, Ruiqiang Li, Tingcai Cheng, Tao Jiang, Celine Becquet, Xun Xu, Chun Liu, Xingfu Zha, Wei Fan, Ying Lin, Yihong Shen, Lan Jiang, Jeffrey Jensen, Ines Hellmann, Si Tang, Ping Zhao, Hanfu Xu, Chang Yu, Guojie Zhang, Jun Li, Jianjun Cao, Shiping Liu, Ningjia He, Yan Zhou, Hui Liu, Jing Zhao, Chen Ye, Zhouhe Du, Guoqing Pan, Aichun Zhao, Haojing Shao, Wei Zeng, Ping Wu, Chunfeng Li, Minhui Pan, Jingjing Li, Xuyang Yin, Dawei Li, Juan Wang, Huisong Zheng, Wen Wang, Xiuqing Zhang, Songgang Li, Huanming Yang, Cheng Lu, Rasmus Nielsen, Zeyang Zhou, Jian Wang, Zhonghuai Xiang, Jun Wang Science 326 433-6 2009
Benchmarking next-generation transcriptome sequencing for functional and evolutionary genomics. John G Gibbons, Eric M Janson, Chris Todd Hittinger, Mark Johnston, Patrick Abbot, Antonis Rokas Mol Biol Evol 26 2731-44 2009
Comprehensive assessment of T-cell receptor beta-chain diversity in alphabeta T cells. Harlan S Robins, Paulo V Campregher, Santosh K Srivastava, Abigail Wacher, Cameron J Turtle, Orsalem Kahsai, Stanley R Riddell, Edus H Warren, Christopher S Carlson Blood 114 4099-107 2009
Convergent evolution of metabolic roles in bacterial co-symbionts of insects. John P McCutcheon, Bradon R McDonald, Nancy A Moran Proc Natl Acad Sci U S A 106 15394-9 2009
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