At Illumina, we enjoy seeing how researchers are successfully using our products for a wide range of genetic analysis applications. We are proud to share this list of publications from the growing community of Illumina customers, collaborators, and internal scientists. If we missed one, please send the citation to publications@illumina.com.

Title Authors Source Year
Regulatory divergence in Drosophila revealed by mRNA-seq. C Joel McManus, Joseph D Coolon, Michael O Duff, Jodi Eipper-Mains, Brenton R Graveley, Patricia J Wittkopp Genome Res 20 816-25 2010
The genome sequence of the spontaneously hypertensive rat: Analysis and functional significance. Santosh S Atanur, Inan? Birol, Victor Guryev, Martin Hirst, Oliver Hummel, Catherine Morrissey, Jacques Behmoaras, Xose M Fernandez-Suarez, Michelle D Johnson, William M McLaren, Giannino Patone, Enrico Petretto, Charles Plessy, Kathleen S Rockland, Charles Rockland, Kathrin Saar, Yongjun Zhao, Piero Carninci, Paul Flicek, Ted Kurtz, Edwin Cuppen, Michal Pravenec, Norbert Hubner, Steven J M Jones, Ewan Birney, Timothy J Aitman Genome Res 20 791-803 2010
Assembly algorithms for next-generation sequencing data. Jason R Miller, Sergey Koren, Granger Sutton Genomics 95 315-27 2010
Allele-specific methylation is prevalent and is contributed by CpG-SNPs in the human genome. Robert Shoemaker, Jie Deng, Wei Wang, Kun Zhang Genome Res 2010
A three-dimensional model of the yeast genome. Zhijun Duan, Mirela Andronescu, Kevin Schutz, Sean McIlwain, Yoo Jung Kim, Choli Lee, Jay Shendure, Stanley Fields, C Anthony Blau, William S Noble Nature 465 363-7 2010
An endogenous, systemic RNAi pathway in plants. Patrice Dunoyer, Christopher A Brosnan, Gregory Schott, Yu Wang, Florence Jay, Abdelmalek Alioua, Christophe Himber, Olivier Voinnet EMBO J 29 1699-712 2010
To infinium, and beyond! Karen D Wright, Richard J Gilbertson Cancer Cell 17 419-20 2010
Mammalian microRNAs: experimental evaluation of novel and previously annotated genes. H Rosaria Chiang, Lori W Schoenfeld, J Graham Ruby, Vincent C Auyeung, Noah Spies, Daehyun Baek, Wendy K Johnston, Carsten Russ, Shujun Luo, Joshua E Babiarz, Robert Blelloch, Gary P Schroth, Chad Nusbaum, David P Bartel Genes Dev 24 992-1009 2010
DNA methylation mediated by a microRNA pathway. Liang Wu, Huanyu Zhou, Qingqing Zhang, Jianguang Zhang, Fangrui Ni, Chang Liu, Yijun Qi Mol Cell 38 465-75 2010
Massively parallel sequencing of exons on the X chromosome identifies RBM10 as the gene that causes a syndromic form of cleft palate. Am J Hum Genet 86 743-8 2010
Developmental regulation and individual differences of neuronal H3K4me3 epigenomes in the prefrontal cortex. Iris Cheung, Hennady P Shulha, Yan Jiang, Anouch Matevossian, Jie Wang, Zhiping Weng, Schahram Akbarian Proc Natl Acad Sci U S A 107 8824-9 2010
Deep sequencing analysis of viruses infecting grapevines: Virome of a vineyard. Beatrix Coetzee, Michael-John Freeborough, Hans J Maree, Jean-Marc Celton, D Jasper G Rees, Johan T Burger Virology 400 157-63 2010
Genome analysis of Moraxella catarrhalis strain RH4: a human respiratory tract pathogen. Stefan P W de Vries, Sacha A F T van Hijum, Wolfgang Schueler, Kristian Riesbeck, John P Hays, Peter W M Hermans, Hester J Bootsma J Bacteriol 2010
Dynamic regulation of alternative splicing and chromatin structure in Drosophila gonads revealed by RNA-seq. Qiang Gan, Iouri Chepelev, Gang Wei, Lama Tarayrah, Kairong Cui, Keji Zhao, Xin Chen Cell Res 2010
Genomic Analysis of miRNAs in an Extreme Mammalian Hibernator, the Arctic Ground Squirrel. Yuting Liu, Wenchao Hu, Haifang Wang, Minghua Lu, Chunxuan Shao, Corinna Menzel, Zheng Yan, Ying Li, Sen Zhao, Philipp Khaitovich, Mofang Liu, Wei Chen, Brian M Barnes, Jun Yan Physiol Genomics 2010
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