At Illumina, we enjoy seeing how researchers are successfully using our products for a wide range of genetic analysis applications. We are proud to share this list of publications from the growing community of Illumina customers, collaborators, and internal scientists. If we missed one, please send the citation to publications@illumina.com.

Title Authors Source Year
A RSC/nucleosome complex determines chromatin architecture and facilitates activator binding. Monique Floer, Xin Wang, Vidya Prabhu, Georgina Berrozpe, Santosh Narayan, Dan Spagna, David Alvarez, Jude Kendall, Alexander Krasnitz, Asya Stepansky, James Hicks, Gene O Bryant, Mark Ptashne Cell 141 407-18 2010
Genome-wide assessment of differential roles for p300 and CBP in transcription regulation. Yolande F M Ramos, Matthew S Hestand, Matty Verlaan, Elise Krabbendam, Yavuz Ariyurek, Michiel van Galen, Hans van Dam, Gert-Jan B van Ommen, Johan T den Dunnen, Alt Zantema, Peter A C t Hoen Nucleic Acids Res 2010
Genome, epigenome and RNA sequences of monozygotic twins discordant for multiple sclerosis. Sergio E Baranzini, Joann Mudge, Jennifer C van Velkinburgh, Pouya Khankhanian, Irina Khrebtukova, Neil A Miller, Lu Zhang, Andrew D Farmer, Callum J Bell, Ryan W Kim, Gregory D May, Jimmy E Woodward, Stacy J Caillier, Joseph P McElroy, Refujia Gomez, Marcelo J Pando, Leonda E Clendenen, Elena E Ganusova, Faye D Schilkey, Thiruvarangan Ramaraj, Omar A Khan, Jim J Huntley, Shujun Luo, Pui-Yan Kwok, Thomas D Wu, Gary P Schroth, Jorge R Oksenberg, Stephen L Hauser, Stephen F Kingsmore Nature 464 1351-6 2010
Endogenous short RNAs generated by Dicer 2 and RNA-dependent RNA polymerase 1 regulate mRNAs in the basal fungus Mucor circinelloides. Francisco Esteban Nicolas, Simon Moxon, Juan P de Haro, Silvia Calo, Igor V Grigoriev, Santiago Torres-Mart?nez, Vincent Moulton, Rosa M Ruiz-V?zquez, Tamas Dalmay Nucleic Acids Res 2010
Whole genome DNA methylation analysis based on high throughput sequencing technology. Ning Li, Mingzhi Ye, Yingrui Li, Zhixiang Yan, Lee M Butcher, Jihua Sun, Xu Han, Quan Chen, Xiuqing Zhang, Jun Wang Methods 2010
A feed-forward loop amplifies nutritional regulation of PNPLA3. Yongcheng Huang, Shaoqing He, John Zhong Li, Young-Kyo Seo, Timothy F Osborne, Jonathan C Cohen, Helen H Hobbs Proc Natl Acad Sci U S A 107 7892-7 2010
CpG islands recruit a histone H3 lysine 36 demethylase. Neil P Blackledge, Jin C Zhou, Michael Y Tolstorukov, Anca M Farcas, Peter J Park, Robert J Klose Mol Cell 38 179-90 2010
The transcription factor GATA3 actively represses RUNX3 protein-regulated production of interferon-gamma. Ryoji Yagi, Ilkka S Junttila, Gang Wei, Joseph F Urban, Keji Zhao, William E Paul, Jinfang Zhu Immunity 32 507-17 2010
Diverse Pathways Generate MicroRNA-like RNAs and Dicer-Independent Small Interfering RNAs in Fungi. Heng-Chi Lee, Liande Li, Weifeng Gu, Zhihong Xue, Susan K Crosthwaite, Alexander Pertsemlidis, Zachary A Lewis, Michael Freitag, Eric U Selker, Craig C Mello, Yi Liu Mol Cell 2010
Genome-wide MyoD binding in skeletal muscle cells: a potential for broad cellular reprogramming. Yi Cao, Zizhen Yao, Deepayan Sarkar, Michael Lawrence, Gilson J Sanchez, Maura H Parker, Kyle L MacQuarrie, Jerry Davison, Martin T Morgan, Walter L Ruzzo, Robert C Gentleman, Stephen J Tapscott Dev Cell 18 662-74 2010
Evolutionary dynamics of Clostridium difficile over short and long time scales. Miao He, Mohammed Sebaihia, Trevor D Lawley, Richard A Stabler, Lisa F Dawson, Melissa J Martin, Kathryn E Holt, Helena M B Seth-Smith, Michael A Quail, Richard Rance, Karen Brooks, Carol Churcher, David Harris, Stephen D Bentley, Christine Burrows, Louise Clark, Craig Corton, Vicky Murray, Graham Rose, Scott Thurston, Andries van Tonder, Danielle Walker, Brendan W Wren, Gordon Dougan, Julian Parkhill Proc Natl Acad Sci U S A 107 7527-32 2010
Mitochondrial fusion is required for mtDNA stability in skeletal muscle and tolerance of mtDNA mutations. Hsiuchen Chen, Marc Vermulst, Yun E Wang, Anne Chomyn, Tomas A Prolla, J Michael McCaffery, David C Chan Cell 141 280-9 2010
DNA copy number, including telomeres and mitochondria, assayed using next-generation sequencing. John C Castle, Matthew Biery, Heather Bouzek, Tao Xie, Ronghua Chen, Kira Misura, Stuart Jackson, Christopher D Armour, Jason M Johnson, Carol A Rohl, Christopher K Raymond BMC Genomics 11 244 2010
Direct pathogen detection from swab samples using a new high-throughput sequencing technology. H Yongfeng, Y Fan, D Jie, Y Jian, Z Ting, S Lilian, Q Jin Clin Microbiol Infect 2010
P?rigord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis. Francis Martin, Annegret Kohler, Claude Murat, Raffaella Balestrini, Pedro M Coutinho, Olivier Jaillon, Barbara Montanini, Emmanuelle Morin, Benjamin Noel, Riccardo Percudani, Bettina Porcel, Andrea Rubini, Antonella Amicucci, Joelle Amselem, V?ronique Anthouard, Sergio Arcioni, Fran?ois Artiguenave, Jean-Marc Aury, Paola Ballario, Angelo Bolchi, Andrea Brenna, Annick Brun, Marc Bu?e, Brandi Cantarel, G?rard Chevalier, Arnaud Couloux, Corinne Da Silva, France Denoeud, S?bastien Duplessis, Stefano Ghignone, Beno?t Hilselberger, Mirco Iotti, Beno?t Mar?ais, Antonietta Mello, Michele Miranda, Giovanni Pacioni, Hadi Quesneville, Claudia Riccioni, Roberta Ruotolo, Richard Splivallo, Vilberto Stocchi, Emilie Tisserant, Arturo Roberto Viscomi, Alessandra Zambonelli, Elisa Zampieri, Bernard Henrissat, Marc-Henri Lebrun, Francesco Paolocci, Paola Bonfante, Simone Ottonello, Patrick Wincker Nature 464 1033-8 2010
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