At Illumina, we enjoy seeing how researchers are successfully using our products for a wide range of genetic analysis applications. We are proud to share this list of publications from the growing community of Illumina customers, collaborators, and internal scientists. If we missed one, please send the citation to publications@illumina.com.

Title Authors Source Year
Conserved nucleosome positioning defines replication origins. Matthew L Eaton, Kyriaki Galani, Sukhyun Kang, Stephen P Bell, David M MacAlpine Genes Dev 24 748-53 2010
Conservation and divergence of methylation patterning in plants and animals. Suhua Feng, Shawn J Cokus, Xiaoyu Zhang, Pao-Yang Chen, Magnolia Bostick, Mary G Goll, Jonathan Hetzel, Jayati Jain, Steven H Strauss, Marnie E Halpern, Chinweike Ukomadu, Kirsten C Sadler, Sriharsa Pradhan, Matteo Pellegrini, Steven E Jacobsen Proc Natl Acad Sci U S A 107 8689-94 2010
Genome remodelling in a basal-like breast cancer metastasis and xenograft. Li Ding, Matthew J Ellis, Shunqiang Li, David E Larson, Ken Chen, John W Wallis, Christopher C Harris, Michael D McLellan, Robert S Fulton, Lucinda L Fulton, Rachel M Abbott, Jeremy Hoog, David J Dooling, Daniel C Koboldt, Heather Schmidt, Joelle Kalicki, Qunyuan Zhang, Lei Chen, Ling Lin, Michael C Wendl, Joshua F McMichael, Vincent J Magrini, Lisa Cook, Sean D McGrath, Tammi L Vickery, Elizabeth Appelbaum, Katherine Deschryver, Sherri Davies, Therese Guintoli, Li Lin, Robert Crowder, Yu Tao, Jacqueline E Snider, Scott M Smith, Adam F Dukes, Gabriel E Sanderson, Craig S Pohl, Kim D Delehaunty, Catrina C Fronick, Kimberley A Pape, Jerry S Reed, Jody S Robinson, Jennifer S Hodges, William Schierding, Nathan D Dees, Dong Shen, Devin P Locke, Madeline E Wiechert, James M Eldred, Josh B Peck, Benjamin J Oberkfell, Justin T Lolofie, Feiyu Du, Amy E Hawkins, Michelle D OLaughlin, Kelly E Bernard, Mark Cunningham, Glendoria Elliott, Mark D Mason, Dominic M Thompson, Jennifer L Ivanovich, Pau Nature 464 999-1005 2010
CpG islands influence chromatin structure via the CpG-binding protein Cfp1. John P Thomson, Peter J Skene, Jim Selfridge, Thomas Clouaire, Jacky Guy, Shaun Webb, Alastair R W Kerr, Aim?e Deaton, Rob Andrews, Keith D James, Daniel J Turner, Robert Illingworth, Adrian Bird Nature 464 1082-6 2010
Molecular basis of infrared detection by snakes. Elena O Gracheva, Nicholas T Ingolia, Yvonne M Kelly, Julio F Cordero-Morales, Gunther Hollopeter, Alexander T Chesler, Elda E S?nchez, John C Perez, Jonathan S Weissman, David Julius Nature 464 1006-11 2010
Replacement of Rbpj With Rbpjl in the PTF1 Complex Controls the Final Maturation of Pancreatic Acinar Cells. Toshihiko Masui, Galvin H Swift, Tye Deering, Chengcheng Shen, Ward S Coats, Qiaoming Long, Hans-Peter Els?sser, Mark A Magnuson, Raymond J MacDonald Gastroenterology 2010
Survey of the transcriptome of Aspergillus oryzae via massively parallel mRNA sequencing. Bin Wang, Guangwu Guo, Chao Wang, Ying Lin, Xiaoning Wang, Mouming Zhao, Yong Guo, Minghui He, Yong Zhang, Li Pan Nucleic Acids Res 2010
Genome-wide analysis of mRNA abundance in two life-cycle stages of Trypanosoma brucei and identification of splicing and polyadenylation sites. Tim Nicolai Siegel, Doeke R Hekstra, Xuning Wang, Scott Dewell, George A M Cross Nucleic Acids Res 2010
Large-scale detection and analysis of RNA editing in grape mtDNA by RNA deep-sequencing. Ernesto Picardi, David S Horner, Matteo Chiara, Riccardo Schiavon, Giorgio Valle, Graziano Pesole Nucleic Acids Res 38 4755-67 2010
A splicing-independent function of SF2/ASF in microRNA processing. Han Wu, Shuying Sun, Kang Tu, Yuan Gao, Bin Xie, Adrian R Krainer, Jun Zhu Mol Cell 38 67-77 2010
The complete mitochondrial DNA genome of an unknown hominin from southern Siberia. Johannes Krause, Qiaomei Fu, Jeffrey M Good, Bence Viola, Michael V Shunkov, Anatoli P Derevianko, Svante P??bo Nature 464 894-7 2010
Detection of splice junctions from paired-end RNA-seq data by SpliceMap. Kin Fai Au, Hui Jiang, Lan Lin, Yi Xing, Wing Hung Wong Nucleic Acids Res 38 4570-8 2010
Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP. Markus Hafner, Markus Landthaler, Lukas Burger, Mohsen Khorshid, Jean Hausser, Philipp Berninger, Andrea Rothballer, Manuel Ascano, Anna-Carina Jungkamp, Mathias Munschauer, Alexander Ulrich, Greg S Wardle, Scott Dewell, Mihaela Zavolan, Thomas Tuschl Cell 141 129-41 2010
The genome of a songbird. Wesley C Warren, David F Clayton, Hans Ellegren, Arthur P Arnold, Ladeana W Hillier, Axel K?nstner, Steve Searle, Simon White, Albert J Vilella, Susan Fairley, Andreas Heger, Lesheng Kong, Chris P Ponting, Erich D Jarvis, Claudio V Mello, Pat Minx, Peter Lovell, Tarciso A F Velho, Margaret Ferris, Christopher N Balakrishnan, Saurabh Sinha, Charles Blatti, Sarah E London, Yun Li, Ya-Chi Lin, Julia George, Jonathan Sweedler, Bruce Southey, Preethi Gunaratne, Michael Watson, Kiwoong Nam, Niclas Backstr?m, Linnea Smeds, Benoit Nabholz, Yuichiro Itoh, Osceola Whitney, Andreas R Pfenning, Jason Howard, Martin V?lker, Bejamin M Skinner, Darren K Griffin, Liang Ye, William M McLaren, Paul Flicek, Victor Quesada, Gloria Velasco, Carlos Lopez-Otin, Xose S Puente, Tsviya Olender, Doron Lancet, Arian F A Smit, Robert Hubley, Miriam K Konkel, Jerilyn A Walker, Mark A Batzer, Wanjun Gu, David D Pollock, Lin Chen, Ze Cheng, Evan E Eichler, Jessica Stapley, Jon Slate, Robert Ekblom, Tim Birkhead, Ter Nature 464 757-62 2010
Genome-wide analysis of histone modifications in human pancreatic islets. Reena Bhandare, Jonathan Schug, John Le Lay, Alan Fox, Olga Smirnova, Chengyang Liu, Ali Naji, Klaus H Kaestner Genome Res 20 428-33 2010
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