At Illumina, we enjoy seeing how researchers are successfully using our products for a wide range of genetic analysis applications. We are proud to share this list of publications from the growing community of Illumina customers, collaborators, and internal scientists. If we missed one, please send the citation to publications@illumina.com.

Title Authors Source Year
BRD7 is a candidate tumour suppressor gene required for p53 function. Jarno Drost, Fiamma Mantovani, Francesca Tocco, Ran Elkon, Anna Comel, Henne Holstege, Ron Kerkhoven, Jos Jonkers, P Mathijs Voorhoeve, Reuven Agami, Giannino Del Sal Nat Cell Biol 12 380-9 2010
Transcriptome genetics using second generation sequencing in a Caucasian population. Stephen B Montgomery, Micha Sammeth, Maria Gutierrez-Arcelus, Radoslaw P Lach, Catherine Ingle, James Nisbett, Roderic Guigo, Emmanouil T Dermitzakis Nature 464 773-7 2010
Understanding mechanisms underlying human gene expression variation with RNA sequencing. Joseph K Pickrell, John C Marioni, Athma A Pai, Jacob F Degner, Barbara E Engelhardt, Everlyne Nkadori, Jean-Baptiste Veyrieras, Matthew Stephens, Yoav Gilad, Jonathan K Pritchard Nature 464 768-72 2010
Integrative analysis of the melanoma transcriptome. Michael F Berger, Joshua Z Levin, Krishna Vijayendran, Andrey Sivachenko, Xian Adiconis, Jared Maguire, Laura A Johnson, James Robinson, Roel G Verhaak, Carrie Sougnez, Robert C Onofrio, Liuda Ziaugra, Kristian Cibulskis, Elisabeth Laine, Jordi Barretina, Wendy Winckler, David E Fisher, Gad Getz, Matthew Meyerson, David B Jaffe, Stacey B Gabriel, Eric S Lander, Reinhard Dummer, Andreas Gnirke, Chad Nusbaum, Levi A Garraway Genome Res 20 413-27 2010
Targeted high throughput sequencing of a cancer-related exome subset by specific sequence capture with a fully automated microarray platform. Daniel Summerer, Nadine Schracke, Haiguo Wu, Yang Cheng, Stephan Bau, Cord F St?hler, Peer F St?hler, Markus Beier Genomics 95 241-6 2010
Impact of replication timing on non-CpG and CpG substitution rates in mammalian genomes. Chun-Long Chen, Aur?lien Rappailles, Lauranne Duquenne, Maxime Huvet, Guillaume Guilbaud, Laurent Farinelli, Benjamin Audit, Yves dAubenton-Carafa, Alain Arneodo, Olivier Hyrien, Claude Thermes Genome Res 20 447-57 2010
Characterization of transcriptional complexity during berry development in Vitis vinifera using RNA-Seq. Sara Zenoni, Alberto Ferrarini, Enrico Giacomelli, Luciano Xumerle, Marianna Fasoli, Giovanni Malerba, Diana Bellin, Mario Pezzotti, Massimo Delledonne Plant Physiol 152 1787-95 2010
Dormancy contributes to the maintenance of microbial diversity. Stuart E Jones, Jay T Lennon Proc Natl Acad Sci U S A 107 5881-6 2010
Fine-mapping and mutation analysis of TRPM1: a candidate gene for leopard complex (LP) spotting and congenital stationary night blindness in horses. Rebecca R Bellone, George Forsyth, Tosso Leeb, Sheila Archer, Snaevar Sigurdsson, Freyja Imsland, Evan Mauceli, Martina Engensteiner, Ernest Bailey, Lynne Sandmeyer, Bruce Grahn, Kerstin Lindblad-Toh, Claire M Wade Brief Funct Genomics 9 193-207 2010
Nitrite-driven anaerobic methane oxidation by oxygenic bacteria. Katharina F Ettwig, Margaret K Butler, Denis Le Paslier, Eric Pelletier, Sophie Mangenot, Marcel M M Kuypers, Frank Schreiber, Bas E Dutilh, Johannes Zedelius, Dirk de Beer, Jolein Gloerich, Hans J C T Wessels, Theo van Alen, Francisca Luesken, Ming L Wu, Katinka T van de Pas-Schoonen, Huub J M Op den Camp, Eva M Janssen-Megens, Kees-Jan Francoijs, Henk Stunnenberg, Jean Weissenbach, Mike S M Jetten, Marc Strous Nature 464 543-8 2010
Polygenic and directional regulatory evolution across pathways in Saccharomyces. James H Bullard, Yulia Mostovoy, Sandrine Dudoit, Rachel B Brem Proc Natl Acad Sci U S A 107 5058-63 2010
Dynamic transcriptomes during neural differentiation of human embryonic stem cells revealed by short, long, and paired-end sequencing. Jia Qian Wu, Lukas Habegger, Parinya Noisa, Anna Szekely, Caihong Qiu, Stephen Hutchison, Debasish Raha, Michael Egholm, Haifan Lin, Sherman Weissman, Wei Cui, Mark Gerstein, Michael Snyder Proc Natl Acad Sci U S A 107 5254-9 2010
Distinct phases of siRNA synthesis in an endogenous RNAi pathway in C. elegans soma. Jonathan I Gent, Ayelet T Lamm, Derek M Pavelec, Jay M Maniar, Poornima Parameswaran, Li Tao, Scott Kennedy, Andrew Z Fire Mol Cell 37 679-89 2010
The primary transcriptome of the major human pathogen Helicobacter pylori. Cynthia M Sharma, Steve Hoffmann, Fabien Darfeuille, Jérémy Reignier, Sven Findeiss, Alexandra Sittka, Sandrine Chabas, Kristin Reiche, Jörg Hackermüller, Richard Reinhardt, Peter F Stadler, Jörg Vogel Nature 464 250-5 2010
Remarkably ancient balanced polymorphisms in a multi-locus gene network. Chris Todd Hittinger, Paula Gonçalves, José Paulo Sampaio, Jim Dover, Mark Johnston, Antonis Rokas Nature 464 54-8 2010
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