At Illumina, we enjoy seeing how researchers are successfully using our products for a wide range of genetic analysis applications. We are proud to share this list of publications from the growing community of Illumina customers, collaborators, and internal scientists. If we missed one, please send the citation to publications@illumina.com.
| Title | Authors | Source | Year |
| Annotating non-coding transcription using functional genomics strategies. | Alistair R R Forrest, Rehab F Abdelhamid, Piero Carninci | Brief Funct Genomic Proteomic 8 437-43 | 2009 |
| Uncovering small RNA-mediated responses to phosphate-deficiency in Arabidopsis by deep sequencing. | Li-Ching Hsieh, Shu-I Lin, Arthur Chun-Chieh Shih, June-Wei Chen, Wei-Yi Lin, Ching-Ying Tseng, Wen-Hsiung Li, Tzyy-Jen Chiou | Plant Physiol | 2009 |
| Endogenous, Tissue-Specific Short Interfering RNAs Silence the Chalcone Synthase Gene Family in Glycine max Seed Coats. | Jigyasa H Tuteja, Gracia Zabala, Kranthi Varala, Matthew Hudson, Lila O Vodkin | Plant Cell | 2009 |
| Analysis of human alphaherpesvirus microRNA expression in latently infected human trigeminal ganglia. | Jennifer L Umbach, Maria A Nagel, Randall J Cohrs, Donald H Gilden, Bryan R Cullen | J Virol 83 10677-83 | 2009 |
| Large-scale sorting of C. elegans embryos reveals the dynamics of small RNA expression. | Marlon Stoeckius, Jonas Maaskola, Teresa Colombo, Hans-Peter Rahn, Marc R Friedländer, Na Li, Wei Chen, Fabio Piano, Nikolaus Rajewsky | Nat Methods 6 745-51 | 2009 |
| The non-coding RNA of the multidrug resistance-linked vault particle encodes multiple regulatory small RNAs. | Helena Persson, Anders Kvist, Johan Vallon-Christersson, Patrik Medstrand, Ake Borg, Carlos Rovira | Nat Cell Biol 11 1268-71 | 2009 |
| Evolution of vault RNAs. | Peter F Stadler, Julian J-L Chen, Jörg Hackermüller, Steve Hoffmann, Friedemann Horn, Phillip Khaitovich, Antje K Kretzschmar, Axel Mosig, Sonja J Prohaska, Xiaodong Qi, Katharina Schutt, Kerstin Ullmann | Mol Biol Evol 26 1975-91 | 2009 |
| GASZ is essential for male meiosis and suppression of retrotransposon expression in the male germline. | Lang Ma, Gregory M Buchold, Michael P Greenbaum, Angshumoy Roy, Kathleen H Burns, Huifeng Zhu, Derek Y Han, R Alan Harris, Cristian Coarfa, Preethi H Gunaratne, Wei Yan, Martin M Matzuk | PLoS Genet 5 e1000635 | 2009 |
| Widespread shortening of 3UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells. | Christine Mayr, David P Bartel | Cell 138 673-84 | 2009 |
| Cell contact-dependent acquisition of cellular and viral nonautonomously encoded small RNAs. | Oded Rechavi, Yaniv Erlich, Hila Amram, Lena Flomenblit, Fedor V Karginov, Itamar Goldstein, Gregory J Hannon, Yoel Kloog | Genes Dev 23 1971-9 | 2009 |
| Abundant and dynamically expressed miRNAs, piRNAs, and other small RNAs in the vertebrate Xenopus tropicalis. Summary | Javier Armisen, Michael J Gilchrist, Anna Wilczynska, Nancy Standart, Eric A Miska | Genome Res 19 1766-75 | 2009 |
| Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv. Summary | Bo Wei, Tao Cai, Rongzhi Zhang, Aili Li, Naxin Huo, Shan Li, Yong Q Gu, John Vogel, Jizeng Jia, Yijun Qi, Long Mao | Funct Integr Genomics 9 499-511 | 2009 |
| Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: a generic method for diagnosis, discovery and sequencing of viruses. Summary | Jan F Kreuze, Ana Perez, Milton Untiveros, Dora Quispe, Segundo Fuentes, Ian Barker, Reinhard Simon | Virology 388 1-7 | 2009 |
| Collapse of germline piRNAs in the absence of Argonaute3 reveals somatic piRNAs in flies. Summary | Chengjian Li, Vasily V Vagin, Soohyun Lee, Jia Xu, Shengmei Ma, Hualin Xi, Hervé Seitz, Michael D Horwich, Monika Syrzycka, Barry M Honda, Ellen L W Kittler, Maria L Zapp, Carla Klattenhoff, Nadine Schulz, William E Theurkauf, Zhiping Weng, Phillip D Zamore | Cell 137 509-21 | 2009 |
| Genome-wide and organ-specific landscapes of epigenetic modifications and their relationships to mRNA and small RNA transcriptomes in maize. | Xiangfeng Wang, Axel A Elling, Xueyong Li, Ning Li, Zhiyu Peng, Guangming He, Hui Sun, Yijun Qi, X Shirley Liu, Xing Wang Deng | Plant Cell 21 1053-69 | 2009 |