At Illumina, we enjoy seeing how researchers are successfully using our products for a wide range of genetic analysis applications. We are proud to share this list of publications from the growing community of Illumina customers, collaborators, and internal scientists. If we missed one, please send the citation to publications@illumina.com.

Title Authors Source Year
Regulation of MicroRNA Expression and Abundance during Lymphopoiesis Stefan Kuchen, Wolfgang Resch, Arito Yamane, Nan Kuo, Zhiyu Li, Tirtha Chakraborty, Lai Wei, Arian Laurence, Tomoharu Yasuda, Siying Peng, Jane Hu-Li, Kristina Lu, Wendy Dubois, Yoshiaki Kitamura, Nicolas Charles, Hong-wei Sun, Stefan Muljo, Pamela L Schwartzberg, William E Paul, John OShea, Klaus Rajewsky, Rafael Casellas Immunity
An endogenous, systemic RNAi pathway in plants. Patrice Dunoyer, Christopher A Brosnan, Gregory Schott, Yu Wang, Florence Jay, Abdelmalek Alioua, Christophe Himber, Olivier Voinnet EMBO J 29 1699-712 2010
Mammalian microRNAs: experimental evaluation of novel and previously annotated genes. H Rosaria Chiang, Lori W Schoenfeld, J Graham Ruby, Vincent C Auyeung, Noah Spies, Daehyun Baek, Wendy K Johnston, Carsten Russ, Shujun Luo, Joshua E Babiarz, Robert Blelloch, Gary P Schroth, Chad Nusbaum, David P Bartel Genes Dev 24 992-1009 2010
DNA methylation mediated by a microRNA pathway. Liang Wu, Huanyu Zhou, Qingqing Zhang, Jianguang Zhang, Fangrui Ni, Chang Liu, Yijun Qi Mol Cell 38 465-75 2010
Genomic Analysis of miRNAs in an Extreme Mammalian Hibernator, the Arctic Ground Squirrel. Yuting Liu, Wenchao Hu, Haifang Wang, Minghua Lu, Chunxuan Shao, Corinna Menzel, Zheng Yan, Ying Li, Sen Zhao, Philipp Khaitovich, Mofang Liu, Wei Chen, Brian M Barnes, Jun Yan Physiol Genomics 2010
Transcriptome analysis of Pseudomonas syringae identifies new genes, noncoding RNAs, and antisense activity. Melanie J Filiatrault, Paul V Stodghill, Philip A Bronstein, Simon Moll, Magdalen Lindeberg, George Grills, Peter Schweitzer, Wei Wang, Gary P Schroth, Shujun Luo, Irina Khrebtukova, Yong Yang, Theodore Thannhauser, Bronwyn G Butcher, Samuel Cartinhour, David J Schneider J Bacteriol 192 2359-72 2010
Diverse Pathways Generate MicroRNA-like RNAs and Dicer-Independent Small Interfering RNAs in Fungi. Heng-Chi Lee, Liande Li, Weifeng Gu, Zhihong Xue, Susan K Crosthwaite, Alexander Pertsemlidis, Zachary A Lewis, Michael Freitag, Eric U Selker, Craig C Mello, Yi Liu Mol Cell 2010
Transcriptome genetics using second generation sequencing in a Caucasian population. Stephen B Montgomery, Micha Sammeth, Maria Gutierrez-Arcelus, Radoslaw P Lach, Catherine Ingle, James Nisbett, Roderic Guigo, Emmanouil T Dermitzakis Nature 464 773-7 2010
Distinct phases of siRNA synthesis in an endogenous RNAi pathway in C. elegans soma. Jonathan I Gent, Ayelet T Lamm, Derek M Pavelec, Jay M Maniar, Poornima Parameswaran, Li Tao, Scott Kennedy, Andrew Z Fire Mol Cell 37 679-89 2010
Capture and sequence analysis of RNAs with terminal 2,3-cyclic phosphates. Kevin Schutz, Jay R Hesselberth, Stanley Fields RNA 16 621-31 2010
Post-transcriptional regulation of miR-27 in murine cytomegalovirus infection. Amy H Buck, Jonathan Perot, Michael A Chisholm, Diwakar S Kumar, Lee Tuddenham, Valérie Cognat, Lisa Marcinowski, Lars Dölken, Sébastien Pfeffer RNA 16 307-15 2010
Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis. Dov Moldovan, Andrew Spriggs, Jun Yang, Barry J Pogson, Elizabeth S Dennis, Iain W Wilson J Exp Bot 61 165-77 2010
A single-base resolution map of an archaeal transcriptome. Omri Wurtzel, Rajat Sapra, Feng Chen, Yiwen Zhu, Blake A Simmons, Rotem Sorek Genome Res 20 133-41 2010
Identification and characterization of microRNAs and endogenous siRNAs in Schistosoma japonicum. Lili Hao, Pengfei Cai, Ning Jiang, Heng Wang, Qijun Chen BMC Genomics 11 55 2010
3-end sequencing for expression quantification (3SEQ) from archival tumor samples. Andrew H Beck, Ziming Weng, Daniela M Witten, Shirley Zhu, Joseph W Foley, Phil Lacroute, Cheryl L Smith, Robert Tibshirani, Matt van de Rijn, Arend Sidow, Robert B West PLoS One 5 e8768 2010
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