At Illumina, we enjoy seeing how researchers are successfully using our products for a wide range of genetic analysis applications. We are proud to share this list of publications from the growing community of Illumina customers, collaborators, and internal scientists. If we missed one, please send the citation to publications@illumina.com.

Title Authors Source Year
Wilms tumor chromatin profiles highlight stem cell properties and a renal developmental network. Aviva Presser Aiden, Miguel N Rivera, Esther Rheinbay, Manching Ku, Erik J Coffman, Thanh T Truong, Sara O Vargas, Eric S Lander, Daniel A Haber, Bradley E Bernstein Cell Stem Cell 6 591-602 2010
Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities. Arttu Jolma, Teemu Kivioja, Jarkko Toivonen, Lu Cheng, Gonghong Wei, Martin Enge, Mikko Taipale, Juan M Vaquerizas, Jian Yan, Mikko J Sillanp??, Martin Bonke, Kimmo Palin, Shaheynoor Talukder, Timothy R Hughes, Nicholas M Luscombe, Esko Ukkonen, Jussi Taipale Genome Res 20 861-73 2010
A three-dimensional model of the yeast genome. Zhijun Duan, Mirela Andronescu, Kevin Schutz, Sean McIlwain, Yoo Jung Kim, Choli Lee, Jay Shendure, Stanley Fields, C Anthony Blau, William S Noble Nature 465 363-7 2010
Developmental regulation and individual differences of neuronal H3K4me3 epigenomes in the prefrontal cortex. Iris Cheung, Hennady P Shulha, Yan Jiang, Anouch Matevossian, Jie Wang, Zhiping Weng, Schahram Akbarian Proc Natl Acad Sci U S A 107 8824-9 2010
Cooperation between the transcription factors p63 and IRF6 is essential to prevent cleft palate in mice. Helen A Thomason, Huiqing Zhou, Evelyn N Kouwenhoven, Gian-Paolo Dotto, Gaia Restivo, Bach-Cuc Nguyen, Hayley Little, Michael J Dixon, Hans van Bokhoven, Jill Dixon J Clin Invest 120 1561-9 2010
Single base-resolution methylome of the silkworm reveals a sparse epigenomic map. Hui Xiang, Jingde Zhu, Quan Chen, Fangyin Dai, Xin Li, Muwang Li, Hongyu Zhang, Guojie Zhang, Dong Li, Yang Dong, Li Zhao, Ying Lin, Daojun Cheng, Jian Yu, Jinfeng Sun, Xiaoyu Zhou, Kelong Ma, Yinghua He, Yangxing Zhao, Shicheng Guo, Mingzhi Ye, Guangwu Guo, Yingrui Li, Ruiqiang Li, Xiuqing Zhang, Lijia Ma, Karsten Kristiansen, Qiuhong Guo, Jianhao Jiang, Stephan Beck, Qingyou Xia, Wen Wang, Jun Wang Nat Biotechnol 28 516-20 2010
Pol II and its associated epigenetic marks are present at Pol III-transcribed noncoding RNA genes. Artem Barski, Iouri Chepelev, Dritan Liko, Suresh Cuddapah, Alastair B Fleming, Joanna Birch, Kairong Cui, Robert J White, Keji Zhao Nat Struct Mol Biol 17 629-34 2010
Human RNA polymerase III transcriptomes and relationships to Pol II promoter chromatin and enhancer-binding factors. Andrew J Oler, Ravi K Alla, Douglas N Roberts, Alexander Wong, Peter C Hollenhorst, Katherine J Chandler, Patrick A Cassiday, Cassie A Nelson, Curt H Hagedorn, Barbara J Graves, Bradley R Cairns Nat Struct Mol Biol 17 620-8 2010
A CTCF-independent role for cohesin in tissue-specific transcription. Dominic Schmidt, Petra C Schwalie, Caryn S Ross-Innes, Antoni Hurtado, Gordon D Brown, Jason S Carroll, Paul Flicek, Duncan T Odom Genome Res 20 578-88 2010
Estrogen receptor alpha controls a gene network in luminal-like breast cancer cells comprising multiple transcription factors and microRNAs. Luigi Cicatiello, Margherita Mutarelli, Oli M V Grober, Ornella Paris, Lorenzo Ferraro, Maria Ravo, Roberta Tarallo, Shujun Luo, Gary P Schroth, Martin Seifert, Christian Zinser, Maria Luisa Chiusano, Alessandra Traini, Michele De Bortoli, Alessandro Weisz Am J Pathol 176 2113-30 2010
A RSC/nucleosome complex determines chromatin architecture and facilitates activator binding. Monique Floer, Xin Wang, Vidya Prabhu, Georgina Berrozpe, Santosh Narayan, Dan Spagna, David Alvarez, Jude Kendall, Alexander Krasnitz, Asya Stepansky, James Hicks, Gene O Bryant, Mark Ptashne Cell 141 407-18 2010
Genome-wide assessment of differential roles for p300 and CBP in transcription regulation. Yolande F M Ramos, Matthew S Hestand, Matty Verlaan, Elise Krabbendam, Yavuz Ariyurek, Michiel van Galen, Hans van Dam, Gert-Jan B van Ommen, Johan T den Dunnen, Alt Zantema, Peter A C t Hoen Nucleic Acids Res 2010
A feed-forward loop amplifies nutritional regulation of PNPLA3. Yongcheng Huang, Shaoqing He, John Zhong Li, Young-Kyo Seo, Timothy F Osborne, Jonathan C Cohen, Helen H Hobbs Proc Natl Acad Sci U S A 107 7892-7 2010
The transcription factor GATA3 actively represses RUNX3 protein-regulated production of interferon-gamma. Ryoji Yagi, Ilkka S Junttila, Gang Wei, Joseph F Urban, Keji Zhao, William E Paul, Jinfang Zhu Immunity 32 507-17 2010
CpG islands recruit a histone H3 lysine 36 demethylase. Neil P Blackledge, Jin C Zhou, Michael Y Tolstorukov, Anca M Farcas, Peter J Park, Robert J Klose Mol Cell 38 179-90 2010
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