At Illumina, we enjoy seeing how researchers are successfully using our products for a wide range of genetic analysis applications. We are proud to share this list of publications from the growing community of Illumina customers, collaborators, and internal scientists. If we missed one, please send the citation to publications@illumina.com.

Title Authors Source Year
Microbes and Health Sackler Colloquium: Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. J Gregory Caporaso, Christian L Lauber, William A Walters, Donna Berg-Lyons, Catherine A Lozupone, Peter J Turnbaugh, Noah Fierer, Rob Knight Proc Natl Acad Sci U S A 2010
Deep sequencing analysis of viruses infecting grapevines: Virome of a vineyard. Beatrix Coetzee, Michael-John Freeborough, Hans J Maree, Jean-Marc Celton, D Jasper G Rees, Johan T Burger Virology 400 157-63 2010
Dormancy contributes to the maintenance of microbial diversity. Stuart E Jones, Jay T Lennon Proc Natl Acad Sci U S A 107 5881-6 2010
Nitrite-driven anaerobic methane oxidation by oxygenic bacteria. Katharina F Ettwig, Margaret K Butler, Denis Le Paslier, Eric Pelletier, Sophie Mangenot, Marcel M M Kuypers, Frank Schreiber, Bas E Dutilh, Johannes Zedelius, Dirk de Beer, Jolein Gloerich, Hans J C T Wessels, Theo van Alen, Francisca Luesken, Ming L Wu, Katinka T van de Pas-Schoonen, Huub J M Op den Camp, Eva M Janssen-Megens, Kees-Jan Francoijs, Henk Stunnenberg, Jean Weissenbach, Mike S M Jetten, Marc Strous Nature 464 543-8 2010
A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464 59-65 2010
Confirmation of the Sequence of Candidatus Liberibacter asiaticus and Assessment of Microbial Diversity in Huanglongbing-Infected Citrus Phloem Using a Metagenomic Approach. Heather L Tyler, Luiz F W Roesch, Siddarame Gowda, William O Dawson, Eric W Triplett Mol Plant Microbe Interact 22 1624-34 2009
The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes. Florent E Angly, Dana Willner, Alejandra Prieto-Davó, Robert A Edwards, Robert Schmieder, Rebecca Vega-Thurber, Dionysios A Antonopoulos, Katie Barott, Matthew T Cottrell, Christelle Desnues, Elizabeth A Dinsdale, Mike Furlan, Matthew Haynes, Matthew R Henn, Yongfei Hu, David L Kirchman, Tracey McDole, John D McPherson, Folker Meyer, R Michael Miller, Egbert Mundt, Robert K Naviaux, Beltran Rodriguez-Mueller, Rick Stevens, Linda Wegley, Lixin Zhang, Baoli Zhu, Forest Rohwer PLoS Comput Biol 5 e1000593 2009
Metagenomic study of the oral microbiota by Illumina high-throughput sequencing. Summary Vladimir Lazarevic, Katrine Whiteson, Susan Huse, David Hernandez, Laurent Farinelli, Magne Osterås, Jacques Schrenzel, Patrice François J Microbiol Methods 79 266-71 2009
Sensitive, specific polymorphism discovery in bacteria using massively parallel sequencing. Chad Nusbaum, Toshiro K Ohsumi, James Gomez, John Aquadro, Thomas C Victor, Robert M Warren, Deborah T Hung, Bruce W Birren, Eric S Lander, David B Jaffe Nat Methods 6 67-9 2009
WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads. Wolfgang Gerlach, Sebastian Jünemann, Felix Tille, Alexander Goesmann, Jens Stoye BMC Bioinformatics 10 430 2009