At Illumina, we enjoy seeing how researchers are successfully using our products for a wide range of genetic analysis applications. We are proud to share this list of publications from the growing community of Illumina customers, collaborators, and internal scientists. If we missed one, please send the citation to publications@illumina.com.
| Title | Authors | Source | Year |
| ISOLATE: a computational strategy for identifying the primary origin of cancers using high-throughput sequencing. | Gerald Quon, Quaid Morris | Bioinformatics 25 2882-9 | 2009 |
| Computation for ChIP-seq and RNA-seq studies. | Shirley Pepke, Barbara Wold, Ali Mortazavi | Nat Methods 6 S22-32 | 2009 |
| Genome-wide mapping of alternative splicing in Arabidopsis thaliana. | Sergei A Filichkin, Henry D Priest, Scott A Givan, Rongkun Shen, Douglas W Bryant, Samuel E Fox, Weng-Keen Wong, Todd C Mockler | Genome Res | 2009 |
| Screening of human gene promoter activities using transfected-cell arrays. | Xi Cheng, Anna Guerasimova, Thomas Manke, Philip Rosenstiel, Stefan Haas, Hans-Joerg Warnatz, Robert Querfurth, Wilfried Nietfeld, Dominique Vanhecke, Hans Lehrach, Marie-Laure Yaspo, Michal Janitz | Gene | 2009 |
| Genome-wide analysis of allelic expression imbalance in human primary cells by high throughput transcriptome resequencing. | Graham A Heap, Jennie H M Yang, Kate Downes, Barry C Healy, Karen A Hunt, Nicholas Bockett, Lude Franke, Patrick C Dubois, Charles A Mein, Richard J Dobson, Thomas J Albert, Matthew J Rodesch, David G Clayton, John A Todd, David A van Heel, Vincent Plagnol | Hum Mol Genet | 2009 |
| Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution. | Sohrab P Shah, Ryan D Morin, Jaswinder Khattra, Leah Prentice, Trevor Pugh, Angela Burleigh, Allen Delaney, Karen Gelmon, Ryan Guliany, Janine Senz, Christian Steidl, Robert A Holt, Steven Jones, Mark Sun, Gillian Leung, Richard Moore, Tesa Severson, Greg A Taylor, Andrew E Teschendorff, Kane Tse, Gulisa Turashvili, Richard Varhol, René L Warren, Peter Watson, Yongjun Zhao, Carlos Caldas, David Huntsman, Martin Hirst, Marco A Marra, Samuel Aparicio | Nature 461 809-13 | 2009 |
| Relative power and sample size analysis on gene expression profiling data. | M van Iterson, P t Hoen, P Pedotti, G Hooiveld, J den Dunnen, Gj van Ommen, J Boer, R Menezes | BMC Genomics 10 439 | 2009 |
| Loss of cardiac microRNA-mediated regulation leads to dilated cardiomyopathy and heart failure. | Prakash K Rao, Yumiko Toyama, H Rosaria Chiang, Sumeet Gupta, Michael Bauer, Rostislav Medvid, Ferenc Reinhardt, Ronglih Liao, Monty Krieger, Rudolf Jaenisch, Harvey F Lodish, Robert Blelloch | Circ Res 105 585-94 | 2009 |
| Zcchc11-dependent uridylation of microRNA directs cytokine expression. | Matthew R Jones, Lee J Quinton, Matthew T Blahna, Joel R Neilson, Suneng Fu, Alexander R Ivanov, Dieter A Wolf, Joseph P Mizgerd | Nat Cell Biol 11 1157-63 | 2009 |
| Benchmarking next-generation transcriptome sequencing for functional and evolutionary genomics. | John G Gibbons, Eric M Janson, Chris Todd Hittinger, Mark Johnston, Patrick Abbot, Antonis Rokas | Mol Biol Evol | 2009 |
| De novo copy number variants identify new genes and loci in isolated sporadic tetralogy of Fallot. Summary | Steven C Greenway, Alexandre C Pereira, Jennifer C Lin, Steven R DePalma, Samuel J Israel, Sonia M Mesquita, Emel Ergul, Jessie H Conta, Joshua M Korn, Steven A McCarroll, Joshua M Gorham, Stacey Gabriel, David M Altshuler, Maria de Lourdes Quintanilla-Dieck, Maria Alexandra Artunduaga, Roland D Eavey, Robert M Plenge, Nancy A Shadick, Michael E Weinblatt, Philip L De Jager, David A Hafler, Roger E Breitbart, Jonathan G Seidman, Christine E Seidman | Nat Genet 41 931-5 | 2009 |
| Deep sequencing of the zebrafish transcriptome response to mycobacterium infection. Summary | Zoltán Hegedus, Anna Zakrzewska, Vilmos C Agoston, Anita Ordas, Péter Rácz, Mátyás Mink, Herman P Spaink, Annemarie H Meijer | Mol Immunol 46 2918-30 | 2009 |
| Conserved miRNA analysis in Gossypium hirsutum through small RNA sequencing. Summary | Meng-Bin Ruan, Ying-Tao Zhao, Zhao-Hong Meng, Xiu-Jie Wang, Wei-Cai Yang | Genomics 94 263-8 | 2009 |
| Transcriptome analysis by strand-specific sequencing of complementary DNA. Summary | Dmitri Parkhomchuk, Tatiana Borodina, Vyacheslav Amstislavskiy, Maria Banaru, Linda Hallen, Sylvia Krobitsch, Hans Lehrach, Alexey Soldatov | Nucleic Acids Res | 2009 |
| Transcriptome of embryonic and neonatal mouse cortex by high-throughput RNA sequencing. Summary | Xinwei Han, Xia Wu, Wen-Yu Chung, Tao Li, Anton Nekrutenko, Naomi S Altman, Gong Chen, Hong Ma | Proc Natl Acad Sci U S A 106 12741-6 | 2009 |