At Illumina, we enjoy seeing how researchers are successfully using our products for a wide range of genetic analysis applications. We are proud to share this list of publications from the growing community of Illumina customers, collaborators, and internal scientists. If we missed one, please send the citation to publications@illumina.com.

Title Authors Source Year
Analysis of the association between CIMP and BRAF in colorectal cancer by DNA methylation profiling. Toshinori Hinoue, Daniel J Weisenberger, Fei Pan, Mihaela Campan, Myungjin Kim, Joanne Young, Vicki L Whitehall, Barbara A Leggett, Peter W Laird PLoS One 4 e8357 2009
Genetic characterization and linkage disequilibrium estimation of a global maize collection using SNP markers. Jianbing Yan, Trushar Shah, Marilyn L Warburton, Edward S Buckler, Michael D McMullen, Jonathan Crouch PLoS One 4 e8451 2009
Telomere dynamics in human cells reprogrammed to pluripotency. Steven T Suhr, Eun Ah Chang, Ramon M Rodriguez, Kai Wang, Pablo J Ross, Zeki Beyhan, Shashanka Murthy, Jose B Cibelli PLoS One 4 e8124 2009
Depauperate genetic variability detected in the American and European bison using genomic techniques. Cino Pertoldi, Malgorzata Tokarska, Jan M Wójcik, Ditte Demontis, Volker Loeschcke, Vivi R Gregersen, David Coltman, Gregory A Wilson, Ettore Randi, Michael M Hansen, Christian Bendixen Biol Direct 4 48; discussion 48 2009
The role of copy number variation in susceptibility to amyotrophic lateral sclerosis: genome-wide association study and comparison with published loci. Louise V Wain, Inti Pedroso, John E Landers, Gerome Breen, Christopher E Shaw, P Nigel Leigh, Robert H Brown, Martin D Tobin, Ammar Al-Chalabi PLoS One 4 e8175 2009
RNA editing genes associated with extreme old age in humans and with lifespan in C. elegans. Paola Sebastiani, Monty Montano, Annibale Puca, Nadia Solovieff, Toshio Kojima, Meng C Wang, Efthymia Melista, Micah Meltzer, Sylvia E J Fischer, Stacy Andersen, Stephen H Hartley, Amanda Sedgewick, Yasumichi Arai, Aviv Bergman, Nir Barzilai, Dellara F Terry, Alberto Riva, Chiara Viviani Anselmi, Alberto Malovini, Aya Kitamoto, Motoji Sawabe, Tomio Arai, Yasuyuki Gondo, Martin H Steinberg, Nobuyoshi Hirose, Gil Atzmon, Gary Ruvkun, Clinton T Baldwin, Thomas T Perls PLoS One 4 e8210 2009
Measuring cis-acting regulatory variants genome-wide: new insights into expression genetics and disease susceptibility. Wolfgang Sadee Genome Med 1 116 2009
Microarray-based DNA methylation analysis of imprinted loci in a patient with transient neonatal diabetes mellitus. Jose I Martin-Subero, Marina Bibikova, Deborah Mackay, Eliza Wickham-Garcia, Nadia Sellami, Julia Richter, Rene Santer, Almuth Caliebe, Jian-Bing Fan, I Karen Temple, Reiner Siebert Am J Med Genet A 146A 3227-9 2008
Duplication of 7q34 in pediatric low-grade astrocytomas detected by high-density single-nucleotide polymorphism-based genotype arrays results in a novel BRAF fusion gene. Angela J Sievert, Eric M Jackson, Xiaowu Gai, Hakon Hakonarson, Alexander R Judkins, Adam C Resnick, Leslie N Sutton, Phillip B Storm, Tamim H Shaikh, Jaclyn A Biegel Brain Pathol 19 449-58 2009
Discovering interactions among BRCA1 and other candidate genes associated with sporadic breast cancer. Shaw-Hwa Lo, Herman Chernoff, Lei Cong, Yuejing Ding, Tian Zheng Proc Natl Acad Sci U S A 105 12387-92 2008
Identification of ALK as a major familial neuroblastoma predisposition gene. Yaël P Mossé, Marci Laudenslager, Luca Longo, Kristina A Cole, Andrew Wood, Edward F Attiyeh, Michael J Laquaglia, Rachel Sennett, Jill E Lynch, Patrizia Perri, Geneviève Laureys, Frank Speleman, Cecilia Kim, Cuiping Hou, Hakon Hakonarson, Ali Torkamani, Nicholas J Schork, Garrett M Brodeur, Gian P Tonini, Eric Rappaport, Marcella Devoto, John M Maris Nature 455 930-5 2008
Genomic screening identifies novel linkages and provides further evidence for a role of MYH9 in nonsyndromic cleft lip and palate. Brett T Chiquet, Syed S Hashmi, Robin Henry, Amber Burt, John B Mulliken, Samuel Stal, Molly Bray, Susan H Blanton, Jacqueline T Hecht Eur J Hum Genet 17 195-204 2009
A genome-wide scan for common genetic variants with a large influence on warfarin maintenance dose. Gregory M Cooper, Julie A Johnson, Taimour Y Langaee, Hua Feng, Ian B Stanaway, Ute I Schwarz, Marylyn D Ritchie, C Michael Stein, Dan M Roden, Joshua D Smith, David L Veenstra, Allan E Rettie, Mark J Rieder Blood 112 1022-7 2008
Resolving individuals contributing trace amounts of DNA to highly complex mixtures using high-density SNP genotyping microarrays. Nils Homer, Szabolcs Szelinger, Margot Redman, David Duggan, Waibhav Tembe, Jill Muehling, John V Pearson, Dietrich A Stephan, Stanley F Nelson, David W Craig PLoS Genet 4 e1000167 2008
Genetic variation in PSCA is associated with susceptibility to diffuse-type gastric cancer. Nat Genet 40 730-40 2008
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