At Illumina, we enjoy seeing how researchers are successfully using our products for a wide range of genetic analysis applications. We are proud to share this list of publications from the growing community of Illumina customers, collaborators, and internal scientists. If we missed one, please send the citation to publications@illumina.com.

Title Authors Source Year
Multiple genetic loci for bone mineral density and fractures. Unnur Styrkarsdottir, Bjarni V Halldorsson, Solveig Gretarsdottir, Daniel F Gudbjartsson, G Bragi Walters, Thorvaldur Ingvarsson, Thorbjorg Jonsdottir, Jona Saemundsdottir, Jacqueline R Center, Tuan V Nguyen, Yu Bagger, Jeffrey R Gulcher, John A Eisman, Claus Christiansen, Gunnar Sigurdsson, Augustine Kong, Unnur Thorsteinsdottir, Kari Stefansson N Engl J Med 358 2355-65 2008
Newly identified genetic risk variants for celiac disease related to the immune response. Karen A Hunt, Alexandra Zhernakova, Graham Turner, Graham A R Heap, Lude Franke, Marcel Bruinenberg, Jihane Romanos, Lotte C Dinesen, Anthony W Ryan, Davinder Panesar, Rhian Gwilliam, Fumihiko Takeuchi, William M McLaren, Geoffrey K T Holmes, Peter D Howdle, Julian R F Walters, David S Sanders, Raymond J Playford, Gosia Trynka, Chris J J Mulder, M Luisa Mearin, Wieke H M Verbeek, Valerie Trimble, Fiona M Stevens, Colm OMorain, Nicholas P Kennedy, Dermot Kelleher, Daniel J Pennington, David P Strachan, Wendy L McArdle, Charles A Mein, Martin C Wapenaar, Panos Deloukas, Ralph McGinnis, Ross McManus, Cisca Wijmenga, David A van Heel Nat Genet 40 395-402 2008
Worldwide human relationships inferred from genome-wide patterns of variation. Jun Z Li, Devin M Absher, Hua Tang, Audrey M Southwick, Amanda M Casto, Sohini Ramachandran, Howard M Cann, Gregory S Barsh, Marcus Feldman, Luigi L Cavalli-Sforza, Richard M Myers Science 319 1100-4 2008
Genotype, haplotype and copy-number variation in worldwide human populations. Mattias Jakobsson, Sonja W Scholz, Paul Scheet, J Raphael Gibbs, Jenna M VanLiere, Hon-Chung Fung, Zachary A Szpiech, James H Degnan, Kai Wang, Rita Guerreiro, Jose M Bras, Jennifer C Schymick, Dena G Hernandez, Bryan J Traynor, Javier Simon-Sanchez, Mar Matarin, Angela Britton, Joyce van de Leemput, Ian Rafferty, Maja Bucan, Howard M Cann, John A Hardy, Noah A Rosenberg, Andrew B Singleton Nature 451 998-1003 2008
Evaluating cost efficiency of SNP chips in genome-wide association studies. Chun Li, Mingyao Li, Ji-Rong Long, Qiuyin Cai, Wei Zheng Genet Epidemiol 32 387-95 2008
Multiple loci identified in a genome-wide association study of prostate cancer. Gilles Thomas, Kevin B Jacobs, Meredith Yeager, Peter Kraft, Sholom Wacholder, Nick Orr, Kai Yu, Nilanjan Chatterjee, Robert Welch, Amy Hutchinson, Andrew Crenshaw, Geraldine Cancel-Tassin, Brian J Staats, Zhaoming Wang, Jesus Gonzalez-Bosquet, Jun Fang, Xiang Deng, Sonja I Berndt, Eugenia E Calle, Heather Spencer Feigelson, Michael J Thun, Carmen Rodriguez, Demetrius Albanes, Jarmo Virtamo, Stephanie Weinstein, Fredrick R Schumacher, Edward Giovannucci, Walter C Willett, Olivier Cussenot, Antoine Valeri, Gerald L Andriole, E David Crawford, Margaret Tucker, Daniela S Gerhard, Joseph F Fraumeni, Robert Hoover, Richard B Hayes, David J Hunter, Stephen J Chanock Nat Genet 40 310-5 2008
Multiple newly identified loci associated with prostate cancer susceptibility. Nat Genet 40 316-21 2008
Common sequence variants on 2p15 and Xp11.22 confer susceptibility to prostate cancer. Julius Gudmundsson, Patrick Sulem, Thorunn Rafnar, Jon T Bergthorsson, Andrei Manolescu, Daniel Gudbjartsson, Bjarni A Agnarsson, Asgeir Sigurdsson, Kristrun R Benediktsdottir, Thorarinn Blondal, Margret Jakobsdottir, Simon N Stacey, Jelena Kostic, Kari T Kristinsson, Birgitta Birgisdottir, Shyamali Ghosh, Droplaug N Magnusdottir, Steinunn Thorlacius, Gudmar Thorleifsson, S Lilly Zheng, Jielin Sun, Bao-Li Chang, J Bradford Elmore, Joan P Breyer, Kate M McReynolds, Kevin M Bradley, Brian L Yaspan, Fredrik Wiklund, Par Stattin, Sara Lindström, Hans-Olov Adami, Shannon K McDonnell, Daniel J Schaid, Julie M Cunningham, Liang Wang, James R Cerhan, Jennifer L St Sauver, Sara D Isaacs, Kathleen E Wiley, Alan W Partin, Patrick C Walsh, Sonia Polo, Manuel Ruiz-Echarri, Sebastian Navarrete, Fernando Fuertes, Berta Saez, Javier Godino, Philip C Weijerman, Dorine W Swinkels, Katja K Aben, J Alfred Witjes, Brian K Suarez, Brian T Helfand, Michael L Frigge, Kristleifur Kristjansson, Carole Ober, Ei Nat Genet 40 281-3 2008
Evaluation of coverage variation of SNP chips for genome-wide association studies. Mingyao Li, Chun Li, Weihua Guan Eur J Hum Genet 16 635-43 2008
Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci. Nat Genet 40 204-10 2008
A nonsynonymous functional variant in integrin-alpha(M) (encoded by ITGAM) is associated with systemic lupus erythematosus. Swapan K Nath, Shizhong Han, Xana Kim-Howard, Jennifer A Kelly, Parvathi Viswanathan, Gary S Gilkeson, Wei Chen, Cheng Zhu, Rodger P McEver, Robert P Kimberly, Marta E Alarcón-Riquelme, Timothy J Vyse, Quan-Zhen Li, Edward K Wakeland, Joan T Merrill, Judith A James, Kenneth M Kaufman, Joel M Guthridge, John B Harley Nat Genet 40 152-4 2008
What can genome-wide association studies tell us about the genetics of common disease? Mark M Iles PLoS Genet 4 e33 2008
Sequence variants in the RNF212 gene associate with genome-wide recombination rate. Augustine Kong, Gudmar Thorleifsson, Hreinn Stefansson, Gisli Masson, Agnar Helgason, Daniel F Gudbjartsson, Gudrun M Jonsdottir, Sigurjon A Gudjonsson, Sverrir Sverrisson, Theodora Thorlacius, Aslaug Jonasdottir, Gudmundur A Hardarson, Stefan T Palsson, Michael L Frigge, Jeffrey R Gulcher, Unnur Thorsteinsdottir, Kari Stefansson Science 319 1398-401 2008
Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX. Geoffrey Hom, Robert R Graham, Barmak Modrek, Kimberly E Taylor, Ward Ortmann, Sophie Garnier, Annette T Lee, Sharon A Chung, Ricardo C Ferreira, P V Krishna Pant, Dennis G Ballinger, Roman Kosoy, F Yesim Demirci, M Ilyas Kamboh, Amy H Kao, Chao Tian, Iva Gunnarsson, Anders A Bengtsson, Solbritt Rantapää-Dahlqvist, Michelle Petri, Susan Manzi, Michael F Seldin, Lars Rönnblom, Ann-Christine Syvänen, Lindsey A Criswell, Peter K Gregersen, Timothy W Behrens N Engl J Med 358 900-9 2008
Genomic copy number and expression variation within the C57BL/6J inbred mouse strain. Dawn E Watkins-Chow, William J Pavan Genome Res 18 60-6 2008
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