At Illumina, we enjoy seeing how researchers are successfully using our products for a wide range of genetic analysis applications. We are proud to share this list of publications from the growing community of Illumina customers, collaborators, and internal scientists. If we missed one, please send the citation to publications@illumina.com.

Title Authors Source Year
Regional differences in recombination hotspots between two chicken populations. Martin G Elferink, Pieter van As, Tineke Veenendaal, Richard P M A Crooijmans, Martien A M Groenen BMC Genet 11 11 2010
Microphthalmia in Texel sheep is associated with a missense mutation in the paired-like homeodomain 3 (PITX3) gene. Summary PLoS One 5 e8689 2010
Recombination and its impact on the genome of the haplodiploid parasitoid wasp Nasonia. Oliver Niehuis, Joshua D Gibson, Michael S Rosenberg, Bart A Pannebakker, Tosca Koevoets, Andrea K Judson, Christopher A Desjardins, Kathleen Kennedy, David Duggan, Leo W Beukeboom, Louis van de Zande, David M Shuker, John H Werren, Jürgen Gadau PLoS One 5 e8597 2010
A comparison of SNPs and microsatellites as linkage mapping markers: lessons from the zebra finch (Taeniopygia guttata). Alexander D Ball, Jessica Stapley, Deborah A Dawson, Tim R Birkhead, Terry Burke, Jon Slate BMC Genomics 11 218 2010
Genome-wide association of lipid-lowering response to statins in combined study populations. Mathew J Barber, Lara M Mangravite, Craig L Hyde, Daniel I Chasman, Joshua D Smith, Catherine A McCarty, Xiaohui Li, Russell A Wilke, Mark J Rieder, Paul T Williams, Paul M Ridker, Aurobindo Chatterjee, Jerome I Rotter, Deborah A Nickerson, Matthew Stephens, Ronald M Krauss PLoS One 5 e9763 2010
Two neighboring microdeletions of 5q13.2 in a child with oculo-auriculo-vertebral spectrum. Xue-shuang Huang, Ling Xiao, Xin Li, Yufang Xie, Hai-ou Jiang, Can Tan, Lei Wang, Jian-xiang Zhang Eur J Med Genet 53 153-8
A new statistic to evaluate imputation reliability. PLoS One 5 e9697 2010
A genome-wide association study identifies susceptibility variants for type 2 diabetes in Han Chinese. Fuu-Jen Tsai, Chi-Fan Yang, Ching-Chu Chen, Lee-Ming Chuang, Chieh-Hsiang Lu, Chwen-Tzuei Chang, Tzu-Yuan Wang, Rong-Hsing Chen, Chiung-Fang Shiu, Yi-Min Liu, Chih-Chun Chang, Pei Chen, Chien-Hsiun Chen, Cathy S J Fann, Yuan-Tsong Chen, Jer-Yuarn Wu PLoS Genet 6 e1000847 2010
DNA methylation profiles of ovarian epithelial carcinoma tumors and cell lines. Sahar Houshdaran, Sarah Hawley, Chana Palmer, Mihaela Campan, Mari N Olsen, Aviva P Ventura, Beatrice S Knudsen, Charles W Drescher, Nicole D Urban, Patrick O Brown, Peter W Laird PLoS One 5 e9359 2010
Genome-wide association study in Asian populations identifies variants in ETS1 and WDFY4 associated with systemic lupus erythematosus. PLoS Genet 6 e1000841 2010
Identification of copy number variations and common deletion polymorphisms in cattle. Joon Seol Bae, Hyun Sub Cheong, Lyoung Hyo Kim, Suk NamGung, Tae Joon Park, Ji-Yong Chun, Jason Yongha Kim, Charisse Flerida A Pasaje, Jin Sol Lee, Hyoung Doo Shin BMC Genomics 11 232 2010
A study of the influence of sex on genome wide methylation. Jingyu Liu, Marilee Morgan, Kent Hutchison, Vince D Calhoun PLoS One 5 e10028 2010
Whole-genome SNP association in the horse: identification of a deletion in myosin Va responsible for Lavender Foal Syndrome. Samantha A Brooks, Nicole Gabreski, Donald Miller, Abra Brisbin, Helen E Brown, Cassandra Streeter, Jason Mezey, Deborah Cook, Douglas F Antczak PLoS Genet 6 e1000909 2010
Malignant precursor cells pre-exist in human breast DCIS and require autophagy for survival. Virginia Espina, Brian D Mariani, Rosa I Gallagher, Khoa Tran, Stacey Banks, Joy Wiedemann, Heather Huryk, Claudius Mueller, Luana Adamo, Jianghong Deng, Emanuel F Petricoin, Lucia Pastore, Syed Zaman, Geetha Menezes, James Mize, Jasbir Johal, Kirsten Edmiston, Lance A Liotta PLoS One 5 e10240 2010
Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms. Toshio Yamamoto, Hideki Nagasaki, Jun-ichi Yonemaru, Kaworu Ebana, Maiko Nakajima, Taeko Shibaya, Masahiro Yano BMC Genomics 11 267 2010
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