At Illumina, we enjoy seeing how researchers are successfully using our products for a wide range of genetic analysis applications. We are proud to share this list of publications from the growing community of Illumina customers, collaborators, and internal scientists. If we missed one, please send the citation to publications@illumina.com.

Title Authors Source Year
Impact of reduced marker set estimation of genomic relationship matrices on genomic selection for feed efficiency in Angus cattle. Megan M Rolf, Jeremy F Taylor, Robert D Schnabel, Stephanie D McKay, Matthew C McClure, Sally L Northcutt, Monty S Kerley, Robert L Weaber BMC Genet 11 24 2010
Differential sensitivity of melanoma cell lines with BRAFV600E mutation to the specific Raf inhibitor PLX4032. Jonas N S?ndergaard, Ramin Nazarian, Qi Wang, Deliang Guo, Teli Hsueh, Stephen Mok, Hooman Sazegar, Laura E MacConaill, Jordi G Barretina, Sarah M Kehoe, Narsis Attar, Erika von Euw, Jonathan E Zuckerman, Bartosz Chmielowski, Bego?a Comin-Anduix, Richard C Koya, Paul S Mischel, Roger S Lo, Antoni Ribas J Transl Med 8 39 2010
Digital quantification of human eye color highlights genetic association of three new loci. Fan Liu, Andreas Wollstein, Pirro G Hysi, Georgina A Ankra-Badu, Timothy D Spector, Daniel Park, Gu Zhu, Mats Larsson, David L Duffy, Grant W Montgomery, David A Mackey, Susan Walsh, Oscar Lao, Albert Hofman, Fernando Rivadeneira, Johannes R Vingerling, Andr? G Uitterlinden, Nicholas G Martin, Christopher J Hammond, Manfred Kayser PLoS Genet 6 e1000934 2010
Abundant quantitative trait Loci exist for DNA methylation and gene expression in human brain. J Raphael Gibbs, Marcel P van der Brug, Dena G Hernandez, Bryan J Traynor, Michael A Nalls, Shiao-Lin Lai, Sampath Arepalli, Allissa Dillman, Ian P Rafferty, Juan Troncoso, Robert Johnson, H Ronald Zielke, Luigi Ferrucci, Dan L Longo, Mark R Cookson, Andrew B Singleton PLoS Genet 6 e1000952 2010
Genomic diversity and introgression in O. sativa reveal the impact of domestication and breeding on the rice genome. Keyan Zhao, Mark Wright, Jennifer Kimball, Georgia Eizenga, Anna McClung, Michael Kovach, Wricha Tyagi, Md Liakat Ali, Chih-Wei Tung, Andy Reynolds, Carlos D Bustamante, Susan R McCouch PLoS One 5 e10780 2010
Clear detection of ADIPOQ locus as the major gene for plasma adiponectin: results of genome-wide association analyses including 4659 European individuals. Iris M Heid, Peter Henneman, Andrew Hicks, Stefan Coassin, Thomas Winkler, Yurii S Aulchenko, Christian Fuchsberger, Kijoung Song, Marie-France Hivert, Dawn M Waterworth, Nicholas J Timpson, J Brent Richards, John R B Perry, Toshiko Tanaka, Najaf Amin, Barbara Kollerits, Irene Pichler, Ben A Oostra, Barbara Thorand, Rune R Frants, Thomas Illig, Josée Dupuis, Beate Glaser, Tim Spector, Jack Guralnik, Josephine M Egan, Jose C Florez, David M Evans, Nicole Soranzo, Stefania Bandinelli, Olga D Carlson, Timothy M Frayling, Keith Burling, George Davey Smith, Vincent Mooser, Luigi Ferrucci, James B Meigs, Peter Vollenweider, Ko Willems van Dijk, Peter Pramstaller, Florian Kronenberg, Cornelia M van Duijn Atherosclerosis 208 412-20 2010
Diploid spermatozoa caused by failure of the second meiotic division in a bull. T Revay, C Kopp, A Flyckt, J Taponen, R Ijäs, S Nagy, A Kovacs, W Rens, D Rath, A Hidas, J F Taylor, M Andersson Theriogenology 73 421-428 2010
A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population. Kouichi Asano, Tomonaga Matsushita, Junji Umeno, Naoya Hosono, Atsushi Takahashi, Takahisa Kawaguchi, Takayuki Matsumoto, Toshiyuki Matsui, Yoichi Kakuta, Yoshitaka Kinouchi, Tooru Shimosegawa, Masayo Hosokawa, Yoshiaki Arimura, Yasuhisa Shinomura, Yutaka Kiyohara, Tatsuhiko Tsunoda, Naoyuki Kamatani, Mitsuo Iida, Yusuke Nakamura, Michiaki Kubo Nat Genet 41 1325-9 2009
Genome-wide association study identifies common variants at four loci as genetic risk factors for Parkinsons disease. Wataru Satake, Yuko Nakabayashi, Ikuko Mizuta, Yushi Hirota, Chiyomi Ito, Michiaki Kubo, Takahisa Kawaguchi, Tatsuhiko Tsunoda, Masahiko Watanabe, Atsushi Takeda, Hiroyuki Tomiyama, Kenji Nakashima, Kazuko Hasegawa, Fumiya Obata, Takeo Yoshikawa, Hideshi Kawakami, Saburo Sakoda, Mitsutoshi Yamamoto, Nobutaka Hattori, Miho Murata, Yusuke Nakamura, Tatsushi Toda Nat Genet 41 1303-7 2009
Genetic structure of the Han Chinese population revealed by genome-wide SNP variation. Jieming Chen, Houfeng Zheng, Jin-Xin Bei, Liangdan Sun, Wei-hua Jia, Tao Li, Furen Zhang, Mark Seielstad, Yi-Xin Zeng, Xuejun Zhang, Jianjun Liu Am J Hum Genet 85 775-85 2009
Genomic dissection of population substructure of Han Chinese and its implication in association studies. Shuhua Xu, Xianyong Yin, Shilin Li, Wenfei Jin, Haiyi Lou, Ling Yang, Xiaohong Gong, Hongyan Wang, Yiping Shen, Xuedong Pan, Yungang He, Yajun Yang, Yi Wang, Wenqing Fu, Yu An, Jiucun Wang, Jingze Tan, Ji Qian, Xiaoli Chen, Xin Zhang, Yangfei Sun, Xuejun Zhang, Bailin Wu, Li Jin Am J Hum Genet 85 762-74 2009
Common genetic variation and the control of HIV-1 in humans. PLoS Genet 5 e1000791 2009
Genome-wide significant predictors of metabolites in the one-carbon metabolism pathway. Aditi Hazra, Peter Kraft, Ross Lazarus, Constance Chen, Stephen J Chanock, Paul Jacques, Jacob Selhub, David J Hunter Hum Mol Genet 18 4677-87 2009
Genetic variants in TPMT and COMT are associated with hearing loss in children receiving cisplatin chemotherapy. Colin J D Ross, Hagit Katzov-Eckert, Marie-Pierre Dubé, Beth Brooks, S Rod Rassekh, Amina Barhdadi, Yassamin Feroz-Zada, Henk Visscher, Andrew M K Brown, Michael J Rieder, Paul C Rogers, Michael S Phillips, Bruce C Carleton, Michael R Hayden,     Nat Genet 41 1345-9 2009
Genome-wide profiling of chromosomal alterations in renal cell carcinoma using high-density single nucleotide polymorphism arrays. Meng Chen, Yuanqing Ye, Hushan Yang, Pheroze Tamboli, Surena Matin, Nizar M Tannir, Christopher G Wood, Jian Gu, Xifeng Wu Int J Cancer 125 2342-8 2009
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