At Illumina, we enjoy seeing how researchers are successfully using our products for a wide range of genetic analysis applications. We are proud to share this list of publications from the growing community of Illumina customers, collaborators, and internal scientists. If we missed one, please send the citation to publications@illumina.com.

Title Authors Source Year
Molecular targets of epigenetic regulation and effectors of environmental influences. Supratim Choudhuri, Yue Cui, Curtis D Klaassen Toxicol Appl Pharmacol 245 378-93 2010
Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma. Cancer Cell 17 510-22 2010
Genome-wide DNA methylation analysis of archival formalin-fixed paraffin-embedded tissue using the Illumina Infinium HumanMethylation27 BeadChip. Christina Thirlwell, Marianne Eymard, Andrew Feber, Andrew Teschendorff, Kerra Pearce, Matthias Lechner, Martin Widschwendter, Stephan Beck Methods 2010
Human aging-associated DNA hypermethylation occurs preferentially at bivalent chromatin domains. Vardhman K Rakyan, Thomas A Down, Siarhei Maslau, Toby Andrew, Tsun-Po Yang, Huriya Beyan, Pamela Whittaker, Owen T McCann, Sarah Finer, Ana M Valdes, R David Leslie, Panogiotis Deloukas, Timothy D Spector Genome Res 20 434-9 2010
De-repression of CTGF via the miR-17-92 cluster upon differentiation of human glioblastoma spheroid cultures. A Ernst, B Campos, J Meier, F Devens, F Liesenberg, M Wolter, G Reifenberger, C Herold-Mende, P Lichter, B Radlwimmer Oncogene 29 3411-22 2010
Gene-specific and global methylation patterns predict outcome in patients with acute myeloid leukemia. S Deneberg, M Gr?vdal, M Karimi, M Jansson, H Nahi, A Corbacioglu, V Gaidzik, K D?hner, C Paul, T J Ekstr?m, E Hellstr?m-Lindberg, S Lehmann Leukemia 24 932-41 2010
Dynamic changes in the human methylome during differentiation. Louise Laurent, Eleanor Wong, Guoliang Li, Tien Huynh, Aristotelis Tsirigos, Chin Thing Ong, Hwee Meng Low, Ken Wing Kin Sung, Isidore Rigoutsos, Jeanne Loring, Chia-Lin Wei Genome Res 20 320-31 2010
Principles and challenges of genome-wide DNA methylation analysis. Peter W Laird Nat Rev Genet 11 191-203 2010
Changes in the pattern of DNA methylation associate with twin discordance in systemic lupus erythematosus. Biola M Javierre, Agustin F Fernandez, Julia Richter, Fatima Al-Shahrour, J Ignacio Martin-Subero, Javier Rodriguez-Ubreva, Maria Berdasco, Mario F Fraga, Terrance P OHanlon, Lisa G Rider, Filipe V Jacinto, F Javier Lopez-Longo, Joaquin Dopazo, Marta Forn, Miguel A Peinado, Luis Carreño, Amr H Sawalha, John B Harley, Reiner Siebert, Manel Esteller, Frederick W Miller, Esteban Ballestar Genome Res 20 170-9 2010
DNA methylation profiles of ovarian epithelial carcinoma tumors and cell lines. Sahar Houshdaran, Sarah Hawley, Chana Palmer, Mihaela Campan, Mari N Olsen, Aviva P Ventura, Beatrice S Knudsen, Charles W Drescher, Nicole D Urban, Patrick O Brown, Peter W Laird PLoS One 5 e9359 2010
A study of the influence of sex on genome wide methylation. Jingyu Liu, Marilee Morgan, Kent Hutchison, Vince D Calhoun PLoS One 5 e10028 2010
Array-based DNA methylation profiling in follicular lymphoma. Summary C ORiain, D M OShea, Y Yang, R Le Dieu, J G Gribben, K Summers, J Yeboah-Afari, L Bhaw-Rosun, C Fleischmann, C A Mein, T Crook, P Smith, G Kelly, A Rosenwald, G Ott, E Campo, L M Rimsza, E B Smeland, W C Chan, N Johnson, R D Gascoyne, S Reimer, R M Braziel, G W Wright, L M Staudt, T A Lister, J Fitzgibbon Leukemia 23 1858-66 2009
Epigenetic profiling reveals etiologically distinct patterns of DNA methylation in head and neck squamous cell carcinoma. Carmen J Marsit, Brock C Christensen, E Andres Houseman, Margaret R Karagas, Margaret R Wrensch, Ru-Fang Yeh, Heather H Nelson, Joseph L Wiemels, Shichun Zheng, Marshall R Posner, Michael D McClean, John K Wiencke, Karl T Kelsey Carcinogenesis 30 416-22 2009
Aberrant DNA methylation is a dominant mechanism in MDS progression to AML. Ying Jiang, Andrew Dunbar, Lukasz P Gondek, Sanjay Mohan, Manjot Rataul, Christine OKeefe, Mikkael Sekeres, Yogen Saunthararajah, Jaroslaw P Maciejewski Blood 113 1315-25 2009
Telomere dynamics in human cells reprogrammed to pluripotency. Steven T Suhr, Eun Ah Chang, Ramon M Rodriguez, Kai Wang, Pablo J Ross, Zeki Beyhan, Shashanka Murthy, Jose B Cibelli PLoS One 4 e8124 2009
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