At Illumina, we enjoy seeing how researchers are successfully using our products for a wide range of genetic analysis applications. We are proud to share this list of publications from the growing community of Illumina customers, collaborators, and internal scientists. If we missed one, please send the citation to publications@illumina.com.

Title Authors Source Year
Gene expression profiling in male B6C3F1 mouse livers exposed to kava identifies--changes in drug metabolizing genes and potential mechanisms linked to kava toxicity. Lei Guo, Qiang Shi, Stacey Dial, Qingsu Xia, Nan Mei, Quan-zhen Li, Po-Chuen Chan, Peter Fu Food Chem Toxicol 48 686-96 2010
Common variants at five new loci associated with early-onset inflammatory bowel disease. Marcin Imielinski, Robert N Baldassano, Anne Griffiths, Richard K Russell, Vito Annese, Marla Dubinsky, Subra Kugathasan, Jonathan P Bradfield, Thomas D Walters, Patrick Sleiman, Cecilia E Kim, Aleixo Muise, Kai Wang, Joseph T Glessner, Shehzad Saeed, Haitao Zhang, Edward C Frackelton, Cuiping Hou, James H Flory, George Otieno, Rosetta M Chiavacci, Robert Grundmeier, Massimo Castro, Anna Latiano, Bruno Dallapiccola, Joanne Stempak, Debra J Abrams, Kent Taylor, Dermot McGovern,    , Gary Silber, Iwona Wrobel, Antonio Quiros,    , Jeffrey C Barrett, Sarah Hansoul, Dan L Nicolae, Judy H Cho, Richard H Duerr, John D Rioux, Steven R Brant, Mark S Silverberg, Kent D Taylor, M Michael Barmuda, Alain Bitton, Themistocles Dassopoulos, Lisa Wu Datta, Todd Green, Anne M Griffiths, Emily O Kistner, Michael T Murtha, Miguel D Regueiro, Jerome I Rotter, L Philip Schumm, A Hillary Steinhart, Stephen R Targan, Ramnik J Xavier,    , Cécile Libioulle, Cynthia Sandor, Mark Nat Genet 41 1335-40 2009
Analysis of FOXP3+ regulatory T cells that display apparent viral antigen specificity during chronic hepatitis C virus infection. Shuo Li, Stefan Floess, Alf Hamann, Silvana Gaudieri, Andrew Lucas, Margaret Hellard, Stuart Roberts, Geza Paukovic, Magdalena Plebanski, Bruce E Loveland, Campbell Aitken, Simon Barry, Louis Schofield, Eric J Gowans PLoS Pathog 5 e1000707 2009
Discovering hematopoietic mechanisms through genome-wide analysis of GATA factor chromatin occupancy. Tohru Fujiwara, Henriette OGeen, Sunduz Keles, Kimberly Blahnik, Amelia K Linnemann, Yoon-A Kang, Kyunghee Choi, Peggy J Farnham, Emery H Bresnick Mol Cell 36 667-81 2009
Human-specific transcriptional regulation of CNS development genes by FOXP2. Genevieve Konopka, Jamee M Bomar, Kellen Winden, Giovanni Coppola, Zophonias O Jonsson, Fuying Gao, Sophia Peng, Todd M Preuss, James A Wohlschlegel, Daniel H Geschwind Nature 462 213-7 2009
Gene expression profiling of paraffin-embedded primary melanoma using the DASL assay identifies increased osteopontin expression as predictive of reduced relapse-free survival. Caroline Conway, Angana Mitra, Rosalyn Jewell, Juliette Randerson-Moor, Samira Lobo, Jérémie Nsengimana, Sara Edward, D Scott Sanders, Martin Cook, Barry Powell, Andy Boon, Faye Elliott, Floor de Kort, Margaret A Knowles, D Timothy Bishop, Julia Newton-Bishop Clin Cancer Res 15 6939-46 2009
Genomic targets of the KRAB and SCAN domain-containing zinc finger protein 263. Seth Frietze, Xun Lan, Victor X Jin, Peggy J Farnham J Biol Chem 285 1393-403 2010
Population genomics in a disease targeted primary cell model. Elin Grundberg, Tony Kwan, Bing Ge, Kevin C L Lam, Vonda Koka, Andreas Kindmark, Hans Mallmin, Joana Dias, Dominique J Verlaan, Manon Ouimet, Daniel Sinnett, Fernando Rivadeneira, Karol Estrada, Albert Hofman, Joyce M van Meurs, André Uitterlinden, Patrick Beaulieu, Alexandru Graziani, Eef Harmsen, Osten Ljunggren, Claes Ohlsson, Dan Mellström, Magnus K Karlsson, Olle Nilsson, Tomi Pastinen Genome Res 19 1942-52 2009
A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium. Nicole Soranzo, Tim D Spector, Massimo Mangino, Brigitte Kühnel, Augusto Rendon, Alexander Teumer, Christina Willenborg, Benjamin Wright, Li Chen, Mingyao Li, Perttu Salo, Benjamin F Voight, Philippa Burns, Roman A Laskowski, Yali Xue, Stephan Menzel, David Altshuler, John R Bradley, Suzannah Bumpstead, Mary-Susan Burnett, Joseph Devaney, Angela Döring, Roberto Elosua, Stephen E Epstein, Wendy Erber, Mario Falchi, Stephen F Garner, Mohammed J R Ghori, Alison H Goodall, Rhian Gwilliam, Hakon H Hakonarson, Alistair S Hall, Naomi Hammond, Christian Hengstenberg, Thomas Illig, Inke R König, Christopher W Knouff, Ruth McPherson, Olle Melander, Vincent Mooser, Matthias Nauck, Markku S Nieminen, Christopher J ODonnell, Leena Peltonen, Simon C Potter, Holger Prokisch, Daniel J Rader, Catherine M Rice, Robert Roberts, Veikko Salomaa, Jennifer Sambrook, Stefan Schreiber, Heribert Schunkert, Stephen M Schwartz, Jovana Serbanovic-Canic, Juha Sinisalo, David S Siscovick, Klaus Stark, Ida Surakka, Nat Genet 41 1182-90 2009
Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies. Nat Genet 41 1199-206 2009
CCL3L1 and HIV/AIDS susceptibility. Thomas J Urban, Amy C Weintrob, Jacques Fellay, Sara Colombo, Kevin V Shianna, Curtis Gumbs, Margalida Rotger, Kimberly Pelak, Kristen K Dang, Roger Detels, Jeremy J Martinson, Stephen J OBrien, Norman L Letvin, Andrew J McMichael, Barton F Haynes, Mary Carrington, Amalio Telenti, Nelson L Michael, David B Goldstein Nat Med 15 1110-2 2009
The nutrigenomics of asthma: molecular mechanisms of airway neutrophilia following dietary antioxidant withdrawal. Katherine J Baines, Lisa G Wood, Peter G Gibson OMICS 13 355-65 2009
Differential gene expression and cytokine production from neutrophils in asthma phenotypes. K J Baines, J L Simpson, N A Bowden, R J Scott, P G Gibson Eur Respir J 35 522-31 2010
Common regulatory variation impacts gene expression in a cell type-dependent manner. Summary Antigone S Dimas, Samuel Deutsch, Barbara E Stranger, Stephen B Montgomery, Christelle Borel, Homa Attar-Cohen, Catherine Ingle, Claude Beazley, Maria Gutierrez Arcelus, Magdalena Sekowska, Marilyne Gagnebin, James Nisbett, Panos Deloukas, Emmanouil T Dermitzakis, Stylianos E Antonarakis Science 325 1246-50 2009
Transcriptional repressor Blimp-1 promotes CD8(+) T cell terminal differentiation and represses the acquisition of central memory T cell properties. Summary Rachel L Rutishauser, Gislâine A Martins, Sergey Kalachikov, Anmol Chandele, Ian A Parish, Eric Meffre, Joshy Jacob, Kathryn Calame, Susan M Kaech Immunity 31 296-308 2009
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