At Illumina, we enjoy seeing how researchers are successfully using our products for a wide range of genetic analysis applications. We are proud to share this list of publications from the growing community of Illumina customers, collaborators, and internal scientists. If we missed one, please send the citation to publications@illumina.com.
| Title | Authors | Source | Year |
| Gene Expression Profiling of Paraffin-Embedded Primary Melanoma Using the DASL Assay Identifies Increased Osteopontin Expression as Predictive of Reduced Relapse-Free Survival. | Caroline Conway, Angana Mitra, Rosalyn Jewell, Juliette Randerson-Moor, Samira Lobo, Jérémie Nsengimana, Sara Edward, D Scott Sanders, Martin Cook, Barry Powell, Andy Boon, Faye Elliott, Floor de Kort, Margaret A Knowles, D Timothy Bishop, Julia Newton-Bishop | Clin Cancer Res | 2009 |
| Differential gene expression and cytokine production from neutrophils in asthma phenotypes. | K J Baines, J L Simpson, N A Bowden, R J Scott, P G Gibson | Eur Respir J | 2009 |
| Common regulatory variation impacts gene expression in a cell type-dependent manner. Summary | Antigone S Dimas, Samuel Deutsch, Barbara E Stranger, Stephen B Montgomery, Christelle Borel, Homa Attar-Cohen, Catherine Ingle, Claude Beazley, Maria Gutierrez Arcelus, Magdalena Sekowska, Marilyne Gagnebin, James Nisbett, Panos Deloukas, Emmanouil T Dermitzakis, Stylianos E Antonarakis | Science 325 1246-50 | 2009 |
| Transcriptional repressor Blimp-1 promotes CD8(+) T cell terminal differentiation and represses the acquisition of central memory T cell properties. Summary | Rachel L Rutishauser, Gislâine A Martins, Sergey Kalachikov, Anmol Chandele, Ian A Parish, Eric Meffre, Joshy Jacob, Kathryn Calame, Susan M Kaech | Immunity 31 296-308 | 2009 |
| Maximum-entropy network analysis reveals a role for tumor necrosis factor in peripheral nerve development and function. Summary | Prabhjot S Dhadialla, Ifije E Ohiorhenuan, Andrew Cohen, Sidney Strickland | Proc Natl Acad Sci U S A 106 12494-9 | 2009 |
| Epithelial to mesenchymal transition contributes to drug resistance in pancreatic cancer. Summary | Thiruvengadam Arumugam, Vijaya Ramachandran, Keith F Fournier, Huamin Wang, Lauren Marquis, James L Abbruzzese, Gary E Gallick, Craig D Logsdon, David J McConkey, Woonyoung Choi | Cancer Res 69 5820-8 | 2009 |
| Identification of crassin acetate as a new immunosuppressant triggering heme oxygenase-1 expression in dendritic cells. Summary | Hironori Matsushima, Hiroaki Tanaka, Norikatsu Mizumoto, Akira Takashima | Blood 114 64-73 | 2009 |
| HIV-1-infected dendritic cells show 2 phases of gene expression changes, with lysosomal enzyme activity decreased during the second phase. Summary | Andrew N Harman, Marianne Kraus, Chris R Bye, Karen Byth, Stuart G Turville, Owen Tang, Sarah K Mercier, Najla Nasr, Josh L Stern, Barry Slobedman, Christoph Driessen, Anthony L Cunningham | Blood 114 85-94 | 2009 |
| DNA binding by estrogen receptor-alpha is essential for the transcriptional response to estrogen in the liver and the uterus. Summary | Dörthe L Ahlbory-Dieker, Brenda D Stride, Gabriele Leder, Jenny Schkoldow, Susanne Trölenberg, Henrik Seidel, Christiane Otto, Anette Sommer, Malcolm G Parker, Günther Schütz, Tim M Wintermantel | Mol Endocrinol 23 1544-55 | 2009 |
| In vivo reprogramming of adult pancreatic exocrine cells to beta-cells. | Qiao Zhou, Juliana Brown, Andrew Kanarek, Jayaraj Rajagopal, Douglas A Melton | Nature 455 627-32 | 2008 |
| Regulatory networks define phenotypic classes of human stem cell lines. | Franz-Josef Müller, Louise C Laurent, Dennis Kostka, Igor Ulitsky, Roy Williams, Christina Lu, In-Hyun Park, Mahendra S Rao, Ron Shamir, Philip H Schwartz, Nils O Schmidt, Jeanne F Loring | Nature 455 401-5 | 2008 |
| Growth inhibition of colon cancer cells by polyisoprenylated benzophenones is associated with induction of the endoplasmic reticulum response. | Petr Protiva, Michael E Hopkins, Scott Baggett, Hui Yang, Martin Lipkin, Peter R Holt, Edward J Kennelly, Weinstein I Bernard | Int J Cancer 123 687-94 | 2008 |
| Characterizing the mouse ES cell transcriptome with Illumina sequencing. | Ruben Rosenkranz, Tatiana Borodina, Hans Lehrach, Heinz Himmelbauer | Genomics 92 187-94 | 2008 |
| Performance comparison of two microarray platforms to assess differential gene expression in human monocyte and macrophage cells. | Seraya Maouche, Odette Poirier, Tiphaine Godefroy, Robert Olaso, Ivo Gut, Jean-Phillipe Collet, Gilles Montalescot, François Cambien | BMC Genomics 9 302 | 2008 |
| Affymetrix Whole-Transcript Human Gene 1.0 ST array is highly concordant with standard 3 expression arrays. | Sylvain Pradervand, Alexandra Paillusson, Jérôme Thomas, Johann Weber, Pratyaksha Wirapati, Otto Hagenbüchle, Keith Harshman | Biotechniques 44 759-62 | 2008 |