At Illumina, we enjoy seeing how researchers are successfully using our products for a wide range of genetic analysis applications. We are proud to share this list of publications from the growing community of Illumina customers, collaborators, and internal scientists. If we missed one, please send the citation to publications@illumina.com.

Title Authors Source Year
HIV-1-infected dendritic cells show 2 phases of gene expression changes, with lysosomal enzyme activity decreased during the second phase. Summary Andrew N Harman, Marianne Kraus, Chris R Bye, Karen Byth, Stuart G Turville, Owen Tang, Sarah K Mercier, Najla Nasr, Josh L Stern, Barry Slobedman, Christoph Driessen, Anthony L Cunningham Blood 114 85-94 2009
DNA binding by estrogen receptor-alpha is essential for the transcriptional response to estrogen in the liver and the uterus. Summary Dörthe L Ahlbory-Dieker, Brenda D Stride, Gabriele Leder, Jenny Schkoldow, Susanne Trölenberg, Henrik Seidel, Christiane Otto, Anette Sommer, Malcolm G Parker, Günther Schütz, Tim M Wintermantel Mol Endocrinol 23 1544-55 2009
Genome-wide association studies: powerful tools for improving drug safety and efficacy. David Gurwitz, Howard L McLeod Pharmacogenomics 10 157-9 2009
In vivo reprogramming of adult pancreatic exocrine cells to beta-cells. Qiao Zhou, Juliana Brown, Andrew Kanarek, Jayaraj Rajagopal, Douglas A Melton Nature 455 627-32 2008
Regulatory networks define phenotypic classes of human stem cell lines. Franz-Josef Müller, Louise C Laurent, Dennis Kostka, Igor Ulitsky, Roy Williams, Christina Lu, In-Hyun Park, Mahendra S Rao, Ron Shamir, Philip H Schwartz, Nils O Schmidt, Jeanne F Loring Nature 455 401-5 2008
Growth inhibition of colon cancer cells by polyisoprenylated benzophenones is associated with induction of the endoplasmic reticulum response. Petr Protiva, Michael E Hopkins, Scott Baggett, Hui Yang, Martin Lipkin, Peter R Holt, Edward J Kennelly, Weinstein I Bernard Int J Cancer 123 687-94 2008
Characterizing the mouse ES cell transcriptome with Illumina sequencing. Ruben Rosenkranz, Tatiana Borodina, Hans Lehrach, Heinz Himmelbauer Genomics 92 187-94 2008
Performance comparison of two microarray platforms to assess differential gene expression in human monocyte and macrophage cells. Seraya Maouche, Odette Poirier, Tiphaine Godefroy, Robert Olaso, Ivo Gut, Jean-Phillipe Collet, Gilles Montalescot, François Cambien BMC Genomics 9 302 2008
Affymetrix Whole-Transcript Human Gene 1.0 ST array is highly concordant with standard 3 expression arrays. Sylvain Pradervand, Alexandra Paillusson, Jérôme Thomas, Johann Weber, Pratyaksha Wirapati, Otto Hagenbüchle, Keith Harshman Biotechniques 44 759-62 2008
A genome-wide gene expression signature of environmental geography in leukocytes of Moroccan Amazighs. Youssef Idaghdour, John D Storey, Sami J Jadallah, Greg Gibson PLoS Genet 4 e1000052 2008
Polycomb repressive complex 2 (PRC2) restricts hematopoietic stem cell activity. Ian J Majewski, Marnie E Blewitt, Carolyn A de Graaf, Edward J McManus, Melanie Bahlo, Adrienne A Hilton, Craig D Hyland, Gordon K Smyth, Jason E Corbin, Donald Metcalf, Warren S Alexander, Douglas J Hilton PLoS Biol 6 e93 2008
Time-course analysis of genome-wide gene expression data from hormone-responsive human breast cancer cells. Margherita Mutarelli, Luigi Cicatiello, Lorenzo Ferraro, Olì Mv Grober, Maria Ravo, Angelo M Facchiano, Claudia Angelini, Alessandro Weisz BMC Bioinformatics 9 Suppl 2 S12 2008
SLC2A9 influences uric acid concentrations with pronounced sex-specific effects. Angela Döring, Christian Gieger, Divya Mehta, Henning Gohlke, Holger Prokisch, Stefan Coassin, Guido Fischer, Kathleen Henke, Norman Klopp, Florian Kronenberg, Bernhard Paulweber, Arne Pfeufer, Dieter Rosskopf, Henry Völzke, Thomas Illig, Thomas Meitinger, H-Erich Wichmann, Christa Meisinger Nat Genet 40 430-6 2008
Elevated expression of SerpinA1 and SerpinA3 in HLA-positive cervical carcinoma. J N Kloth, A Gorter, G J Fleuren, J Oosting, S Uljee, N ter Haar, E J Dreef, G G Kenter, E S Jordanova J Pathol 215 222-30 2008
Anthrax toxins inhibit neutrophil signaling pathways in brain endothelium and contribute to the pathogenesis of meningitis. Nina M van Sorge, Celia M Ebrahimi, Shauna M McGillivray, Darin Quach, Mojgan Sabet, Donald G Guiney, Kelly S Doran PLoS ONE 3 e2964 2008
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