At Illumina, we enjoy seeing how researchers are successfully using our products for a wide range of genetic analysis applications. We are proud to share this list of publications from the growing community of Illumina customers, collaborators, and internal scientists. If we missed one, please send the citation to publications@illumina.com.

Title Authors Source Year
Sequencing of natural strains of Arabidopsis thaliana with short reads. Stephan Ossowski, Korbinian Schneeberger, Richard M Clark, Christa Lanz, Norman Warthmann, Detlef Weigel Genome Res 18 2024-33 2008
Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding. A Gordon Robertson, Mikhail Bilenky, Angela Tam, Yongjun Zhao, Thomas Zeng, Nina Thiessen, Timothee Cezard, Anthony P Fejes, Elizabeth D Wederell, Rebecca Cullum, Ghia Euskirchen, Martin Krzywinski, Inanc Birol, Michael Snyder, Pamela A Hoodless, Martin Hirst, Marco A Marra, Steven J M Jones Genome Res 18 1906-17 2008
Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology. Richard Cronn, Aaron Liston, Matthew Parks, David S Gernandt, Rongkun Shen, Todd Mockler Nucleic Acids Res 36 e122 2008
Caenorhabditis elegans mutant allele identification by whole-genome sequencing. Sumeet Sarin, Snehit Prabhu, M Maggie OMeara, Itsik Peer, Oliver Hobert Nat Methods 5 865-7 2008
Recovery of divergent avian bornaviruses from cases of proventricular dilatation disease: identification of a candidate etiologic agent. Amy Kistler, Ady Gancz, Susan Clubb, Peter Skewes-Cox, Kael Fischer, Katherine Sorber, Charles Chiu, Avishai Lublin, Sara Mechani, Yigal Farnoushi, Alexander Greninger, Christopher Wen, Scott Karlene, Don Ganem, Joseph Derisi Virol J 5 88 2008
PRG-1 and 21U-RNAs interact to form the piRNA complex required for fertility in C. elegans. Pedro J Batista, J Graham Ruby, Julie M Claycomb, Rosaria Chiang, Noah Fahlgren, Kristin D Kasschau, Daniel A Chaves, Weifeng Gu, Jessica J Vasale, Shenghua Duan, Darryl Conte, Shujun Luo, Gary P Schroth, James C Carrington, David P Bartel, Craig C Mello Mol Cell 31 67-78 2008
The new paradigm of flow cell sequencing. Robert A Holt, Steven J M Jones Genome Res 18 839-46 2008
The transcriptional landscape of the yeast genome defined by RNA sequencing. Ugrappa Nagalakshmi, Zhong Wang, Karl Waern, Chong Shou, Debasish Raha, Mark Gerstein, Michael Snyder Science 320 1344-9 2008
Identification of ancient remains through genomic sequencing. Matthew J Blow, Tao Zhang, Tanja Woyke, Camilla F Speller, Andrei Krivoshapkin, Dongya Y Yang, Anatoly Derevianko, Edward M Rubin Genome Res 18 1347-53 2008
Approaches to comparative sequence analysis: towards a functional view of vertebrate genomes. Elliott H Margulies, Ewan Birney Nat Rev Genet 9 303-13 2008
Evaluation of paired-end sequencing strategies for detection of genome rearrangements in cancer. Ali Bashir, Stanislav Volik, Colin Collins, Vineet Bafna, Benjamin J Raphael PLoS Comput Biol 4 e1000051 2008
Mapping translocation breakpoints by next-generation sequencing. Wei Chen, Vera Kalscheuer, Andreas Tzschach, Corinna Menzel, Reinhard Ullmann, Marcel Holger Schulz, Fikret Erdogan, Na Li, Zofia Kijas, Ger Arkesteijn, Isidora Lopez Pajares, Margret Goetz-Sothmann, Uwe Heinrich, Imma Rost, Andreas Dufke, Ute Grasshoff, Birgitta Glaeser, Martin Vingron, H Hilger Ropers Genome Res 18 1143-9 2008
Whole-genome sequencing and variant discovery in C. elegans. LaDeana W Hillier, Gabor T Marth, Aaron R Quinlan, David Dooling, Ginger Fewell, Derek Barnett, Paul Fox, Jarret I Glasscock, Matthew Hickenbotham, Weichun Huang, Vincent J Magrini, Ryan J Richt, Sacha N Sander, Donald A Stewart, Michael Stromberg, Eric F Tsung, Todd Wylie, Tim Schedl, Richard K Wilson, Elaine R Mardis Nat Methods 5 183-8 2008
SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries. Curtis P Van Tassell, Timothy P L Smith, Lakshmi K Matukumalli, Jeremy F Taylor, Robert D Schnabel, Cynthia Taylor Lawley, Christian D Haudenschild, Stephen S Moore, Wesley C Warren, Tad S Sonstegard Nat Methods 5 247-52 2008
Rise of the machines. David Gresham, Leonid Kruglyak PLoS Genet 4 e1000134 2008
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11