At Illumina, we enjoy seeing how researchers are successfully using our products for a wide range of genetic analysis applications. We are proud to share this list of publications from the growing community of Illumina customers, collaborators, and internal scientists. If we missed one, please send the citation to publications@illumina.com.

Title Authors Source Year
Characterization of meiotic crossovers and gene conversion by whole-genome sequencing in Saccharomyces cerevisiae. Ji Qi, Asela J Wijeratne, Lynn P Tomsho, Yi Hu, Stephan C Schuster, Hong Ma BMC Genomics 10 475 2009
Large scale single nucleotide polymorphism discovery in unsequenced genomes using second generation high throughput sequencing technology: applied to turkey. Hindrik H D Kerstens, Richard P M A Crooijmans, Albertine Veenendaal, Bert W Dibbits, Thomas F C Chin-A-Woeng, Johan T den Dunnen, Martien A M Groenen BMC Genomics 10 479 2009
Enrichment of sequencing targets from the human genome by solution hybridization. Ryan Tewhey, Masakazu Nakano, Xiaoyun Wang, Carlos Pabón-Peña, Barbara Novak, Angelica Giuffre, Eric Lin, Scott Happe, Doug N Roberts, Emily M LeProust, Eric J Topol, Olivier Harismendy, Kelly A Frazer Genome Biol 10 R116 2009
Complexity of genome evolution by segmental rearrangement in Brassica rapa revealed by sequence-level analysis. Martin Trick, Soo-Jin Kwon, Su Ryun Choi, Fiona Fraser, Eleni Soumpourou, Nizar Drou, Zhi Wang, Seo Yeon Lee, Tae-Jin Yang, Jeong-Hwan Mun, Andrew H Paterson, Christopher D Town, J Chris Pires, Yong Pyo Lim, Beom-Seok Park, Ian Bancroft BMC Genomics 10 539 2009
High throughput sequencing and proteomics to identify immunogenic proteins of a new pathogen: the dirty genome approach. Gilbert Greub, Carole Kebbi-Beghdadi, Claire Bertelli, François Collyn, Beat M Riederer, Camille Yersin, Antony Croxatto, Didier Raoult PLoS One 4 e8423 2009
Deep RNA sequencing of L. monocytogenes reveals overlapping and extensive stationary phase and sigma B-dependent transcriptomes, including multiple highly transcribed noncoding RNAs. Haley F Oliver, Renato H Orsi, Lalit Ponnala, Uri Keich, Wei Wang, Qi Sun, Samuel W Cartinhour, Melanie J Filiatrault, Martin Wiedmann, Kathryn J Boor BMC Genomics 10 641 2009
Genome-wide dissection of globally emergent multi-drug resistant serotype 19A Streptococcus pneumoniae. Dylan R Pillai, Dea Shahinas, Alla Buzina, Remy A Pollock, Rachel Lau, Krishna Khairnar, Andrew Wong, David J Farrell, Karen Green, Allison McGeer, Donald E Low BMC Genomics 10 642 2009
Noninvasive prenatal diagnosis of fetal chromosomal aneuploidy by massively parallel genomic sequencing of DNA in maternal plasma. Rossa W K Chiu, K C Allen Chan, Yuan Gao, Virginia Y M Lau, Wenli Zheng, Tak Y Leung, Chris H F Foo, Bin Xie, Nancy B Y Tsui, Fiona M F Lun, Benny C Y Zee, Tze K Lau, Charles R Cantor, Y M Dennis Lo Proc Natl Acad Sci U S A 105 20458-63 2008
High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies. Jean-Marc Aury, Corinne Cruaud, Valerie Barbe, Odile Rogier, Sophie Mangenot, Gaelle Samson, Julie Poulain, Veronique Anthouard, Claude Scarpelli, Francois Artiguenave, Patrick Wincker BMC Genomics 9 603 2008
The genome of a lepidopteran model insect, the silkworm Bombyx mori. Insect Biochem Mol Biol 38 1036-45 2008
High-resolution mapping of copy-number alterations with massively parallel sequencing. Derek Y Chiang, Gad Getz, David B Jaffe, Michael J T OKelly, Xiaojun Zhao, Scott L Carter, Carsten Russ, Chad Nusbaum, Matthew Meyerson, Eric S Lander Nat Methods 6 99-103 2009
Accurate whole human genome sequencing using reversible terminator chemistry. David R Bentley, Shankar Balasubramanian, Harold P Swerdlow, Geoffrey P Smith, John Milton, Clive G Brown, Kevin P Hall, Dirk J Evers, Colin L Barnes, Helen R Bignell, Jonathan M Boutell, Jason Bryant, Richard J Carter, R Keira Cheetham, Anthony J Cox, Darren J Ellis, Michael R Flatbush, Niall A Gormley, Sean J Humphray, Leslie J Irving, Mirian S Karbelashvili, Scott M Kirk, Heng Li, Xiaohai Liu, Klaus S Maisinger, Lisa J Murray, Bojan Obradovic, Tobias Ost, Michael L Parkinson, Mark R Pratt, Isabelle M J Rasolonjatovo, Mark T Reed, Roberto Rigatti, Chiara Rodighiero, Mark T Ross, Andrea Sabot, Subramanian V Sankar, Aylwyn Scally, Gary P Schroth, Mark E Smith, Vincent P Smith, Anastassia Spiridou, Peta E Torrance, Svilen S Tzonev, Eric H Vermaas, Klaudia Walter, Xiaolin Wu, Lu Zhang, Mohammed D Alam, Carole Anastasi, Ify C Aniebo, David M D Bailey, Iain R Bancarz, Saibal Banerjee, Selena G Barbour, Primo A Baybayan, Vincent A Benoit, Kevin F Benson, Claire Bevis, Phillip J Black, Ash Nature 456 53-9 2008
The diploid genome sequence of an Asian individual. Jun Wang, Wei Wang, Ruiqiang Li, Yingrui Li, Geng Tian, Laurie Goodman, Wei Fan, Junqing Zhang, Jun Li, Juanbin Zhang, Yiran Guo, Binxiao Feng, Heng Li, Yao Lu, Xiaodong Fang, Huiqing Liang, Zhenglin Du, Dong Li, Yiqing Zhao, Yujie Hu, Zhenzhen Yang, Hancheng Zheng, Ines Hellmann, Michael Inouye, John Pool, Xin Yi, Jing Zhao, Jinjie Duan, Yan Zhou, Junjie Qin, Lijia Ma, Guoqing Li, Zhentao Yang, Guojie Zhang, Bin Yang, Chang Yu, Fang Liang, Wenjie Li, Shaochuan Li, Dawei Li, Peixiang Ni, Jue Ruan, Qibin Li, Hongmei Zhu, Dongyuan Liu, Zhike Lu, Ning Li, Guangwu Guo, Jianguo Zhang, Jia Ye, Lin Fang, Qin Hao, Quan Chen, Yu Liang, Yeyang Su, A San, Cuo Ping, Shuang Yang, Fang Chen, Li Li, Ke Zhou, Hongkun Zheng, Yuanyuan Ren, Ling Yang, Yang Gao, Guohua Yang, Zhuo Li, Xiaoli Feng, Karsten Kristiansen, Gane Ka-Shu Wong, Rasmus Nielsen, Richard Durbin, Lars Bolund, Xiuqing Zhang, Songgang Li, Huanming Yang, Jian Wang Nature 456 60-5 2008
DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome. Timothy J Ley, Elaine R Mardis, Li Ding, Bob Fulton, Michael D McLellan, Ken Chen, David Dooling, Brian H Dunford-Shore, Sean McGrath, Matthew Hickenbotham, Lisa Cook, Rachel Abbott, David E Larson, Dan C Koboldt, Craig Pohl, Scott Smith, Amy Hawkins, Scott Abbott, Devin Locke, Ladeana W Hillier, Tracie Miner, Lucinda Fulton, Vincent Magrini, Todd Wylie, Jarret Glasscock, Joshua Conyers, Nathan Sander, Xiaoqi Shi, John R Osborne, Patrick Minx, David Gordon, Asif Chinwalla, Yu Zhao, Rhonda E Ries, Jacqueline E Payton, Peter Westervelt, Michael H Tomasson, Mark Watson, Jack Baty, Jennifer Ivanovich, Sharon Heath, William D Shannon, Rakesh Nagarajan, Matthew J Walter, Daniel C Link, Timothy A Graubert, John F DiPersio, Richard K Wilson Nature 456 66-72 2008
Drug resistance and genetic mapping in Plasmodium falciparum. Karen Hayton, Xin-Zhuan Su Curr Genet 54 223-39 2008
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