Explore sequencing data sets for a variety
of applications

Sequencing Data Library

View sequencing data generated on Illumina sequencers and analyzed in BaseSpace Sequence Hub, the Illumina genomics computing environment. See how BaseSpace Sequence Hub makes it easy to analyze your sequencing data and generate meaningful reports. View sample data sets and reports for a variety of applications, or test BaseSpace Apps on the sample data, and evaluate the results interactively.

Note that access to this data requires a BaseSpace Sequence Hub login.

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BaseSpace Sequence Hub Data Sets

MiSeq Data Set: TruSight RNA Pan-Cancer
App: RNA-Seq Alignment with STAR aligner
Samples: reference RNA (universal and brain), cell line RNA (MCF7), and breast tumor FFPE RNA
Species Instrument Method Link Type Links
Human MiSeq Targeted RNA Sequencing Project
View Project
MiniSeq Data Set: TruSeq Custom Amplicon Low Input Dual Strand Libraries
Samples: Cancer and normal pairs from lung, rectal and stomach FFPE tissue
Species Instrument Method Link Type Links
Human MiniSeq Amplicon Sequencing Project View Project
Human
MiniSeq Amplicon Sequencing Run View Run
HiSeq 2500 Data Set: Whole-Genome Sequencing
Demonstrates high-quality 2 x 150 bp reads.
Species Instrument Method Link Type Links
Human HiSeq 2500 Resequencing Run View Run
Human HiSeq 2500 Resequencing Run View Run
Human HiSeq 2500 Resequencing Project View Project
MiniSeq Data Set: TruSeq Targeted RNA Expression Kits
Products: TruSeq Targeted RNA Expression Cell Cycle and NFkB Panels
Samples: Reference RNA (universal and brain) and liver RNA
Species Instrument Method Link Type Links
Human MiniSeq Targeted RNA Sequencing Project View Project
Human MiniSeq
Targeted RNA Sequencing Run View Run
MiSeq Data Set: TruSeq Amplicon - Cancer Panel
Sample: FFPE lung carcinoma

Species Instrument Method Link Type Links
Human MiSeq Targeted Sequencing Run View Run
Human
MiSeq Targeted Sequencing Project View Project
HiSeq 2500 Data Set: mRNA Sequencing
Product: TruSeq Stranded mRNA LT
Samples: SEQC brain and reference samples
Species Instrument Method Link Type Links
Human HiSeq 2500 mRNA-Seq Project View Project
MiSeq Data Set: Metagenomics
Protocol: 16s Metagenomics Illumina Library Prep Protocol
Samples: Wastewater sludge, human saliva, and cave samples
Species Instrument Method Link Type Links
Various MiSeq 16s rRNA Sequencing Run View Run
NextSeq Data Set: TruSeq DNA Methylation
Apps: MethylSeq, MethylKit
Sample: Coriell NA12878 (EBV-transformed B cells)
Species Instrument Method Link Type Links
Human NextSeq Methylation Sequencing Project View Project
Human NextSeq Methylation Sequencing Run View Run
MiSeq Data Set: TruSight Myeloid
Product: TruSight Myeloid
Samples: Coriell NA12877 and 12878 (EBV-transformed B cells), and Horizon Multi-Gene Multiplex Reference
Species Instrument Method Link Type Links
Human MiSeq Targeted Sequencing Project View Project
NextSeq Data Set: Nextera XT
Samples: 384 replicates of E. coli strain K-12
Species Instrument Method Link Type Links
E. coli NextSeq Whole-Genome Sequencing
Project View Project
HiSeq 4000 Data Set: TruSeq Exome
Samples: Coriell NA12878 (EBV-transformed B cells)
Species Instrument Method Link Type Links
Human HiSeq 4000 Exome Sequencing Project View Project
Human HiSeq 4000 Exome Sequencing Run View Run
NextSeq 500 Data Set: RNA Sequencing (8-plex)

Products: TruSeq Stranded mRNA or Total RNA with Ribo-Zero Gold
Samples: Reference RNA (brain and universal)

Species Instrument Method Link Type Links
Human NextSeq 500 RNA-Seq Project View Project
NextSeq 500 Data Set: TruSight One
Samples: Replicates of the CEPH trio NA12878, NA12891 and NA12892 (EBV-transformed B cells)
Species Instrument Method Link Type Links
Human NextSeq 500 Targeted Sequencing Run View Run
Human NextSeq 500 Targeted Sequencing Project View Project