The widest breadth of applications

As the only personal sequencer capable of producing paired-end reads, the MiSeq system puts the largest portfolio of sequencing applications at your fingertips. Optimized sample preparation kits, push-button sequencing, and automated data analysis, create the first truly end-to-end sequencing solution.

See what’s possible

View the Application Notes:

• Nextera sample prep for the MiSeq system
  Sequencing’s fastest sample prep delivers quality de novo assembly of small genomes.
• Sequencing Library QC on the MiSeq system
  Pre-configured, automated QC workflows prior to a large-scale sequencing study.
• Amplicon sequencing from FFPE tissues on the MiSeq system
  Simple and fast workflow for accurate detection of rare variants even from degraded DNA.
• High-speed, multiplexed microbial sequencing on the MiSeq System
  Researchers at the University of Colorado at Boulder sequenced the 16S rRNA gene to assess microbial diversity.
• E. coli sequencing on the MiSeq System and Ion Torrent PGM System
  Quality metrics from the sequence of E. coli strain DH10B on the MiSeq system.
• E. coli de novo assembly on the MiSeq System and HiSeq System
  High-quality, paired-end reads ensure superior de novo genome assembly.
• MiSeq efficiently performs bacterial typing
   A retrospective analysis of CDC samples from the 2011 Listeria outbreak with Illumina systems.

Watch the MiSeq Webinar

How next-gen sequencing is revolutionizing cancer diagnoses
Join Dr. Andrew Fellowes of the Peter MacCallum Cancer Centre on April 26, as he discusses how his team uses the MiSeq system and TruSeq Amplicon - Cancer Panel for comprehensive profiling of tumor samples for a wider range of mutations than is possible with traditional technologies.

View the webinar »