Illumina DNA Prep with Exome 2.5 Enrichment

A high-performance, fast, and reliable human whole-exome sequencing solution that includes a comprehensive, up-to-date exome enrichment panel.

6.5시간

Assay 시간

약 2시간

수작업 시간

고품질 genomic DNA 50~1,000 ng(직접 혈액 및 타액의 경우, 참조 가이드 확인)

사용량

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An updated version of this product, Illumina DNA Prep with Exome 2.5 Enrichment v2, was released in February 2026. The v2 kits offer enhanced reagents and protocols.

Overview

Illumina DNA Prep with Exome 2.5 Enrichment offers a cost-effective, reliable solution for human whole-exome sequencing (WES). This kit provides:

  • Focused, comprehensive coverage - maximize sequencing results and get thorough coverage of exomes using a focused, comprehensive, and up-to-date panel

  • Outstanding enrichment performance - decrease costs and increase sample throughput with multiplexing, while achieving high on-target rates and uniform coverage

  • Fast, streamlined workflow - go from DNA to library prep, enrichment, and post-enrichment amplification in only 6.5 hr with a fast, user-friendly workflow that includes built-in library yield normalization and a simplified hybridization protocol

  • Optional mitochondrial genome enrichment - easily add mitochondrial genome coverage with a spike-in panel

  • Automation-friendly workflow - find methods for a range of automation platforms through our partners

Simplified workflow solution from a single vendor

This whole-exome sequencing kit includes library prep and hybridization reagents, clean up/size selection beads, and indexes. The kit also includes the Twist Bioscience for Illumina Exome 2.5 Panel, which offers improved target region coverage for variants reported in public databases. 

Customizable content

Easily add targets to your WES experiment, or boost coverage of critical targets, with a supplementary custom enrichment panel designed for your targets of interest. Add your customized llumina Custom Enrichment Panel v2  as a spike-in to Illumina DNA Prep with Exome 2.5 Enrichment hybridization reactions. Design your customized WES spike-in panel using DesignStudio, the free assay design tool, or with help from the Illumina Concierge design team.

Specifications

Required products

Illumina DNA Prep with Exome 2.5 Enrichment kits include library prep, enrichment, enrichment probe panel, purification beads, and index adapter reagents. Choose a different index set if preferred. 

The Twist Bioscience for Illumina Mitochondrial Panel is an optional fixed content spike-in panel that allows enrichment and sequencing of mitochondrial DNA variants.  

For direct blood input, the Flex Lysis Reagent Kit is required.

The Infinium MIDI Heatblock Insert fits in the SciGene HybEx Microheating system and is required for the enrichment step. 

Spike-in Panels

Illumina DNA Prep with Exome 2.5 Enrichment Kits may be used with the Twist Bioscience for Illumina Mitochondrial Panel, or Illumina Custom Enrichment Panel v2, as spike-in panels. Custom enrichment panels can be designed through the DesignStudio design tool or Illumina Concierge design team.

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Applications

Illumina DNA Prep with Exome 2.5 Enrichment는 빠르고 포괄적인 end-to-end whole-exome 시퀀싱 솔루션으로, 샘플부터 보고까지 지원합니다.

워크플로우 예시

1
라이브러리 준비

Illumina DNA Prep with Exome 2.5 Enrichment

Project recommendations

기기 권장 샘플 수 리드 길이
NextSeq 2000 시스템

Samples per run (by flow cell type): P2: 19, P3: 57 (based on 50× mean target coverage, 42M reads, 4.2 Gb of data)

2 × 101 bp

NovaSeq 6000 시스템

Samples per run by flow cell type: SP: 34, S1: 69, S2: 176, S4: 428 based on 50× mean target coverage, 42M reads, 4.2 Gb of data. Note: S4: 428 requires NovaSeq Xp workflow or additional indexes.

2 × 101 bp

Related applications and methods

Documentation

제품 관련 자료

Compare

Illumina DNA Prep with Exome 2.5 Enrichment Illumina DNA Prep with Enrichment
Assay 시간 6.5시간 ~6.5시간
자동화 상세 정보 사용 가능한 자동화 방법 살펴보기 사용 가능한 자동화 방법 살펴보기
콘텐츠 사양 37.5 Mb 코딩 콘텐츠(≥ 99%의 RefSeq, CCDS, ClinVar 및 ACMG 병원체/병원체일 가능성이 있는 변이, COSMIC 암 유전자 센서스), OMIM Custom: 0.5 - 15 Mb genomic content of interest, with Illumina Custom Enrichment Panels and Illumina Custom Enrichment Panel v2
Fixed panels: Content varies by panel.
설명 비용 효율적이고 안정적인 인간 전장 엑솜 시퀀싱을 위한 최신 엑솜 콘텐츠의 집중 인리치먼트 프로브 패널을 사용하는 인리치먼트 워크플로우가 포함된 빠르고 사용하기 쉬운 라이브러리 준비입니다. 전체 엑솜, 맞춤형 및 고정 패널 표적 시퀀싱을 포함한 다양한 실험을 위한 시퀀싱 라이브러리를 낮은 DNA 입력 및 다양한 샘플 유형으로부터 약 6.5시간 내에 준비합니다. 
수작업 시간 약 2시간 약 2시간, 약 2시간
사용량 고품질 genomic DNA 50~1,000 ng(직접 혈액 및 타액의 경우, 참조 가이드 확인) 고품질 genomic DNA 10~1,000 ng, FFPE DNA 50~1,000 ng. (혈액 및 타액의 경우 참조 가이드 확인).
기기 NextSeq 550 시스템, NextSeq 2000 시스템, NextSeq 1000 시스템, NextSeq 550Dx(Research Mode), NovaSeq X 시스템, NovaSeq 6000 시스템, NovaSeq X Plus 시스템 MiSeq 시스템, iSeq 100 시스템, NextSeq 550 시스템, NextSeq 2000 시스템, MiSeqDx(Research Mode), MiniSeq 시스템, NextSeq 550Dx(Research Mode), NovaSeq X 시스템, NovaSeq 6000Dx(Research Mode), NovaSeq 6000 시스템, NovaSeq X Plus 시스템, MiSeq i100 시스템, MiSeq i100 Plus 시스템
작용 기전 BLT(Bead-Linked Transposome) 및 하이브리드 캡처 chemistry 비드 결합 트랜스포좀 및 하이브리드 캡처 chemistry
방법 표적 DNA 시퀀싱, 엑솜 시퀀싱, 표적 인리치먼트 커스텀 시퀀싱, 표적 DNA 시퀀싱, 엑솜 시퀀싱, 표적 인리치먼트
멀티플렉싱 최대 12플렉스의 사전 인리치먼트 풀링이 테스트됩니다. 키트 구성은 최대 192개 샘플의 멀티플렉싱을 지원합니다. 최대 384개가 가능합니다. 최대 384개의 사용 가능한 고유한 듀얼 인덱스. 최대 12플렉스의 사전 인리치먼트 풀링이 테스트됩니다.
핵산 종류 DNA DNA
표적적중 리드 내부 테스트의 평균 성능을 기준으로 약 90% 엑솜 패널의 경우 ≥85%(예시 데이터 세트의 결과, 실제 성능은 다를 수 있음)
특수 샘플의 종류 혈액, 타액 혈액, 사용량이 적은 샘플, FFPE 조직, 타액
종 카테고리 인간 기타, 인간
기술 시퀀싱 시퀀싱
균일성 내부 테스트의 평균 성능을 기준으로 ≥ 91%(5 Gb의 경우 20× 기준 % 커버리지) ≥90%(4 Gb의 경우 20x 기준 % 커버리지, Exome Panel의 경우)
변이 클래스 단일 염기 다형성(SNP), 이형접합성 소실(LOH), 체세포 변이, 생식세포 변이, 삽입 결실(Indel), 유전자 복제수 변이(CNV) 단일 염기 다형성(SNP), 이형접합성 소실(LOH), 체세포 변이, 생식세포 변이, 삽입 결실(Indel), 유전자 복제수 변이(CNV)

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Figures

Exome 2.5 Panel의 성능 향상

라이브러리 제품군은 1.5시간 또는 16시간의 하이브리드화 시간이 포함된 Exome 2.5 Panel 또는 1.5시간 하이브리드화 시간을 갖는 Illumina Exome Panel(IEP, 20020183) 중 하나를 갖는 Illumina DNA Prep with Exome 2.5 Enrichment을 사용하여 구성 및 농축하였습니다. 농축한 라이브러리는 NovaSeq 6000 시스템에서 시퀀싱하고 DRAGEN Enrichment App을 사용하여 분석했습니다.

High database target coverage rates in silico

Exome 2.5 Panel 및 Exome Panel에 대한 bed files를 열거된 공개 데이터베이스와 비교하고 중첩 백분율을 결정하여 보고했습니다.

Excellent coverage of disease-associated variants in public databases

Illumina DNA Prep with Exome 2.5 Enrichment using a 1.5-hr (orange) or 16-hr (blue) hybridization time shows high average percent coverage at ≥ 20× of targets from public databases.

Resources

custom enrichment panel v2 poster web graphic

Comprehensive solution, from probe design to data analysis, for multiple targeted sequencing applications. Our custom-designed panels ensure high uniformity and coverage, with enhanced coverage of GC-rich and difficult to sequence areas.

엑솜 키트 (2)

Illumina DNA Prep with Exome 2.5 Enrichment, (S) Tagmentation Set B (96 Samples, 12-plex)

20077595

Includes Illumina DNA Prep with Enrichment library preparation and enrichment reagents, Twist Bioscience for Illumina Exome 2.0 Plus Panel, Illumina Purification Beads, and IDT for Illumina DNA/RNA UD Indexes Set B, Tagmentation for whole exome enrichment of 96 libraries (eight, 12-plex enrichment reactions).

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Illumina DNA Prep with Exome 2.5 Enrichment, (S) Tagmentation Set D (96 Samples, 12-plex)

20077596

Includes Illumina DNA Prep with Enrichment library preparation and enrichment reagents, Twist Bioscience for Illumina Exome 2.0 Plus Panel, Illumina Purification Beads, and IDT for Illumina DNA/RNA UD Indexes Set D, Tagmentation for whole exome enrichment of 96 libraries (eight, 12-plex enrichment reactions).

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패널 (4)

Twist Bioscience for Illumina Mitochondrial Panel

20093180

Twist Bioscience for Illumina Mitochondrial Panel can be used for combined enrichment of both human exome plus mitochondrial DNA from whole exome libraries. Provides 32 ul of material, sufficient for 96 samples when paired with Exome 2.5 Panel in the Illumina DNA Prep with Exome 2.5 Enrichment kits (8 hybridization reactions at 12-plex with up to 4 ul oligo panel per reaction), or a minimum of 64 samples when paired with Exome 2.5 Panel in the lllumina FFPE DNA Prep with Exome 2.5 Enrichment kit (16 hybridization reactions at 4-plex with 2 ul oligo panel per hybridization reaction).

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Illumina Custom Enrichment Panel V2 (32 µl, 120 bp)

20073953

Illumina Custom Enrichment Panel V2 enables 120 bp double-stranded custom panel design from 100 up to 1,000,000 probes using DesignStudio or Concierge Services and provides 32 µl of material (sufficient for 8 enrichment reactions when paired with Illumina DNA Prep with Enrichment). Library prep, enrichment, and index adapter reagents need to be ordered separately.

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맞춤 설정

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Illumina Custom Enrichment Panel V2 (384 µl, 120 bp)

20073952

Illumina Custom Enrichment Panel V2 enables 120 bp double-stranded custom panel design from 100 up to 1,000,000 probes using DesignStudio or Concierge Services and provides 384 µl of material (sufficient for 96 enrichment reactions when paired with Illumina DNA Prep with Enrichment). Library prep, enrichment, and index adapter reagents need to be ordered separately.

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맞춤 설정

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Illumina Custom Enrichment Panel V2 (1536 µl, 120 bp)

20111339

Illumina Custom Enrichment Panel V2 enables 120 bp double-stranded custom panel design from 100 up to 1,000,000 probes using DesignStudio or Concierge Services and provides 1536 µl of material (sufficient for 384 enrichment reactions when paired with Illumina DNA Prep with Enrichment). Library prep, enrichment, and index adapter reagents need to be ordered separately.

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맞춤 설정

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액세서리 제품 (8)

Flex Lysis Reagent Kit (96 reactions)

20018706

Includes reagents for processing blood samples with the Illumina DNA Prep and Illumina DNA Prep with Enrichment. Purchase library prep, enrichment, enrichment probe panel, and index adapter reagents separately.

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Illumina® DNA/RNA UD Indexes Set A, Tagmentation (96 Indexes, 96 Samples)

20091654

Illumina® DNA/RNA UD Indexes Set A, Tagmentation (96 Indexes, 96 Samples) Includes 96, 10 bp indexes sufficient for labeling 96 samples. Purchase library prep and enrichment reagents and probe panels separately.

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Illumina® DNA/RNA UD Indexes Set B, Tagmentation (96 Indexes, 96 Samples)

20091656

Illumina® DNA/RNA UD Indexes Set B, Tagmentation (96 Indexes, 96 Samples) Includes 96, 10 bp indexes sufficient for labeling 96 samples. Purchase library prep and enrichment reagents and probe panels separately.

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Illumina® DNA/RNA UD Indexes Set C, Tagmentation (96 Indexes, 96 Samples)

20091658

Illumina® DNA/RNA UD Indexes Set C, Tagmentation (96 Indexes, 96 Samples) Includes 96, 10 bp indexes sufficient for labeling 96 samples. Purchase library prep and enrichment reagents and probe panels separately.

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Illumina® DNA/RNA UD Indexes Set D, Tagmentation (96 Indexes, 96 Samples)

20091660

Illumina® DNA/RNA UD Indexes Set D, Tagmentation (96 Indexes, 96 Samples) Includes 96, 10 bp indexes sufficient for labeling 96 samples. Purchase library prep and enrichment reagents and probe panels separately.

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Infinium MIDI Heatblock Insert

BD-60-601

Heatblock insert for the SciGene Hybex Microheating system required for the Nextera Flex for Enrichment hybridization steps.

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Illumina Purification Bead, 100mL

20060057

Includes one, 100-ml container of beads for library clean-up and size selection. Purchase library prep and enrichment reagents, probe panels, and indexes separately.

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Illumina Purification Bead, 400mL

20060058

Includes four, 100-ml container of beads for library clean-up and size selection. Purchase library prep and enrichment reagents, probe panels, and indexes separately.

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선택 품목 요약

제품

수량

단가

FAQ

Yes, gDNA input of 10-49 ng can be used. However, this protocol does not normalize final pre-enrichment library yields < 50 ng and, therefore, quantification and normalization of libraries before and after enrichment is required.

This protocol has been validated with fresh blood collected in EDTA collection tubes. Other anticoagulants may be used but are not guaranteed when using this kit.

This protocol is validated for saliva collected only in Oragene DNA Saliva collection tubes.

The Twist Bioscience for Illumina Mitochondrial Panel is an optional fixed content panel designed to cover the 16,659 base pairs (bp) and 37 genes of the mitochondrial genome (chrM) and allows enrichment and sequencing of mitochondrial DNA (mtDNA) variants. Use this panel as a spike-in panel in the Illumina DNA Prep with Exome 2.5 Enrichment protocol and add coverage of ChrM to your experiments.

The products previously known as Illumina DNA Prep with Exome 2.0 Plus Enrichment are now called Illumina DNA Prep with Exome 2.5 Enrichment (Cat. No. 20077595 and 20077596). The exome panel oligos have not changed, but the included indexes have been updated to  Illumina DNA/RNA UD Indexes.

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광범위한 시퀀싱 애플리케이션에서 사용할 라이브러리를 준비하기 위한 빠르고 통합된 워크플로우입니다.

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