Bioinformatics Tools
Data powers modern biology and medicine
Our software platforms are the solutions you need to aggregate, interrogate, and share data to achieve scientific breakthroughs
End-to-end bioinformatics software tools
Next-generation sequencers generate massive amounts of data. When you have the right bioinformatics tools, you can aggregate this data, interpret it, and socialize the information quickly.
The Illumina software suite offers data solutions that support genomics research and clinical research from setup to analysis. We embrace changing technology and defy the barriers that challenge innovation.
Setting up your infrastructure
Get connected.
Data sharing allows you to publish and collaborate with speed.
Pipeline setup & management
Bioinformatics infrastructure and pipeline considerations
Access resources and solutions to help simplify your informatics infrastructure and data analysis pipeline setup.
Explore infrastructure & pipeline setupLaboratory information management systems (LIMS)
Automate workflows, integrate instruments, and manage samples with ease.
Learn more about LIMSpromo
Additional Bioinformatics Software Content
Harness the Power of Your Data with Illumina Connected Analytics
A robust, enterprise-grade, versatile platform empowering omics workflows, scalability, global compliance, and data science tools.
Connecting Your Multiomics Data with Informatics
In this webinar, bioinformatics experts discuss multiomics dataset integration challenges, tools used, the impact of multiomic data integration on research, and more.
Cloud-Based Solutions for Genomic Data Storage
Learn how cloud-based genomic data solutions can store, process, and share large NGS and genomic datasets with greater speed, scalability, and security.
Multiomics data solutions
Illumina Connected Multiomics is a fully integrated multiomic and multimodal analysis software from Illumina, enabling seamless sample-to-insight workflows. Researchers can explore multiomic data, reveal deeper biological insights, and accelerate discoveries. With this comprehensive cloud-based platform, biologists can generate powerful statistics and interactive visualizations—no bioinformatics background required.
Learn more about Illumina Connected MultiomicsSequencing data analysis
Our sequencers come equipped with primary data analysis tools built in. For secondary analysis, our bioinformatics tools align and assemble DNA and RNA fragments to fully sequence a sample so that genetic variants can be determined quickly and effectively. For tertiary analysis, our data interpretation tools empower researchers to turn sequencing data into biological insights.
Learn more about NGS data analysisBiological interpretation
Bioinformatics software and biological data mining drive insights into fundamental biological processes and the causes of genetic disease. Use our tools to interpret biological variants, understand population data, and employ focused sequencing applications for drug discovery, cancer research, single-cell analysis, and more.
Learn more about biological data interpretationEnd-to-end solutions
Our software ecosystem provides solutions that span across workflows. From specific applications to secondary and tertiary analysis, our seamless software portfolio enables you to hit development milestones faster.
See all Illumina software
Panel Design
Sample & Workflow Management
Instrument Run Setup & Management
Genomics Run & Monitoring
Secondary Data Analysis
Data Management & Collaboration
Interpretation & Case Reporting
Translational Research
Lab Workbench
| Panel Design | Sample & Workflow Management | Instrument Run Setup & Management | Genomics Run & Monitoring |
|---|---|---|---|
Data Workbench
| Secondary Data Analysis | Data Management & Collaboration | Interpretation & Case Reprting | Translational Research | ||||
|---|---|---|---|---|---|---|---|
Our community of researchers and developers
Get API, application, and developer documentation as well as access to binary downloads and installers so that you can collaborate with other developers and have conversation to make the most of your data.
Open source apps
Access high-quality, freely available software designed by trusted Illumina engineers and partners. Access Illumina GitHub
Events
Access APIs to subscribe to platform events and specify delivery targets for receiving.
Developer Portal
Direct access to developer resources for next-generation sequencing, analysis, and data science.
Visit portalHelp documentation
Learn how to get started, read about our native apps, SDKs and sample apps, developer tools, and more.
Support
Find documentation, FAQs, technical bulletins, training, software downloads, and other resources in our Support Center.
Downloads
Product files and installable software for use with Illumina products.
Popular bioinformatics tools
Illumina Connected Multiomics
A cloud-based multiomic analysis and interpretation software that enables sample-to-insight workflows with visualizations, scalability, and secure data management.
Illumina Connected Analytics
A comprehensive cloud-based genomics data platform for secure data management, infrastructure scalability, and bioinformatics workflow implementation.
Emedgene software
Emedgene software streamlines variant interpretation for rare disease genomics and other germline research applications with explainable AI and automation.
DRAGEN secondary analysis
Illumina DRAGEN (Dynamic Read Analysis for GENomics) secondary analysis provides accurate, ultra-rapid secondary genomic analysis of sequencing data.
BaseSpace Sequence Hub
Data management and simplified bioinformatics for labs getting started and for rapidly scaling next-generation sequencing operations.
Clarity LIMS
This laboratory information management system helps genomics labs track samples, manage workflows, and automate routine tasks.
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Featured Bioinformatics Tools
Illumina Connected Analytics
A robust, enterprise-grade platform that empowers multi-omics workflows, on-demand scalability, and integrated data science tools.
TruSight Software Suite
This software as a service (SaaS) analytics solution integrates with BaseSpace Sequence Hub and is compatible with systems used for rare disease research.
DRAGEN
The Illumina DRAGEN (Dynamic Read Analysis for GENomics) Bio-IT Platform provides accurate, ultra-rapid secondary genomic analysis of sequencing data.
BaseSpace Sequence Hub
Data management and simplified bioinformatics for labs getting started and for rapidly scaling next-generation sequencing operations.
BaseSpace Clarity LIMS
This laboratory information management system helps genomics labs track samples, manage workflows, and automate routine tasks.