Ribo-Zero rRNA Removal Kits Species Compatibility

Ribo-Zero Kit Species Compatibility

Jump to Ribo-Zero compatibility tables for:

Ribo-Zero & Ribo-Zero Gold (Human/Mouse/Rat) Kit Species Compatibility
Species In silico Reported or in published literature Comments
Allium fistulosum (Welch onion)   Removes 18S rRNA. Other rRNAs not tested.
Anopheles gambiae   Removes 18S rRNA. Will not remove 5S, 5.8S, and 12S, 16S mitochondrial rRNA. 28S rRNA not tested.
Apis mellifera (Bee)   Use highest quality RNA possible.
Aspergillus niger   300 nt region of 18S rRNA will not be removed from a degraded sample. Use highest quality RNA possible.
Basidiomycete fungus   Use highest quality RNA possible.
C. elegans   Use highest quality RNA possible.
Candida albicans    
Carpodacus mexicanus (finch)   Removes 5S and 18S rRNA. Will not remove 18S rRNA. Mitochondrial rRNAs not tested.
Ciona intestinalis   Removes 18S rRNA. Other rRNAs not tested.
Cow    
Cryptococcus neoformans   Will not remove 5.8S or 5S rRNAs. Use highest quality RNA possible.
Dog    
Drosophila (Fruit fly)   Will not remove 5S rRNA or 'right' fragment of 28S rRNA.
Equine (horse)    
Gallus gallus (chicken)   Removes 5S, 18S and 28S rRNAs. Mitochondrial rRNAs not tested.
Human    
Lamprey   Use highest quality RNA possible.
Crambe crambe (Marine sponge)   Use highest quality RNA possible.
Monkey (Macaque; Cynomolgus macaques) (African green; Chlorocebus sabaeus)
(Rhesus; Macaca mulatta)
   
Mouse    
Mustela putorius (Ferret)    
 Nematostella vectensis (Sea anemone)   Use highest quality RNA possible.
Notophthalmus viridescens (Newt)   May not remove 5.8S or 5S rRNAs. Use highest quality RNA possible.
Plasmodium falciparum (Protozoa)   Will not remove 5.8S or 5S rRNAs. Use highest quality RNA possible.
Rat    
Rhodnius prolixus   Use highest quality RNA possible. Mitochondrial rRNA not removed.
Swine    
Toxoplasma gondii   Use high quality RNA.
Tribolium castaneum (flour beetle)    
Yarrowia lipolytica   Will not remove 5.8S or 5S rRNAs. Use highest quality RNA possible.
Xenopus (Frog)    
Zebra Fish    
Ribo-Zero (Bacteria) Kit Species Compatibility
Species In silico Reported or in published literature Comments
Acanthamoeba    
Acinetobacter baumanii    
Actinoplanes spp.    
Amoebophilus asiaticus    
Arthroabcter arilaitensis Re117   Removes 16S and 23S rRNA. Will not remove 5S rRNA. Use highest quality RNA possible.
Azotobacter vinelandii    
Bacillus subtilis    
Bacteroides vulgatus    
Brucella abortus    
Bartonella henselae   Removes 16S and 23S rRNA. Will not remove 5S rRNA. Use highest quality RNA possible.
Borrelia burgdorferi   Removes 16S and 23S rRNA. Will not remove 5S rRNA. Use highest quality RNA possible.
Brevibacterium aurantiacum   Removes 16S and 23S rRNA. Will not remove 5S rRNA. Use highest quality RNA possible.
Burkholderia pseudmoallei    
Campylobacter jejuni   Removes 16S and 23S rRNA. Will not remove 5S rRNA. Use highest quality RNA possible.
Chromohalobacter    
Clostridium difficile    
Clostridium ljungdahlii   Removes 16S and 23S rRNA. Will not remove 5S rRNA. Use highest quality RNA possible.
Corynebacterium glutamicum    
Corynebacterium casei   Removes 16S and 23S rRNA. Will not remove 5S rRNA. Use highest quality RNA possible.
Cyanobacteria    
Deinococcus radiodurans   Use high quality RNA.
Dinoroseobacter shibae   Removes 16S and 23S rRNA. Will not remove 5S rRNA.
Eubacterium rectale    
E. coli    
Erwinia amylovora    
Fibrobacter succinogenes   Use high quality RNA.
Francisella    
Geobacter metallireducens   Removes 16S and 23S rRNA. Will not remove 5S rRNA. Use highest quality RNA possible.
Hafnia alvei HA   Will remove 5S, 16S and 23S rRNAs.
Haemophilus ducreyi    
Haloferax volcanii DS2   Will remove 16S and 23S rRNA but use high quality RNA. 5S rRNA not tested.
Helicobacter pylori   Removes 16S and 23S rRNA. Will not remove 5S rRNA. Use highest quality RNA possible.
Ideonella spp   Removes 16S and 23S rRNA. Will not remove 5S rRNA. Use highest quality RNA possible.
Lactobacillus plantarum    
Lactococcus garvieae    
Lactococcus lactis   Removes 16S and 23S rRNA. Will not remove 5S rRNA. Use highest quality RNA possible.
Listeria monocytogenes    
Marinobacter hydrocarbonclasticus    
Mesotoga   Use high quality RNA.
Metallosphaera sedulla   Will not remove 5S rRNA. Use high quality RNA.
Methanobacterium   Will not remove 5S rRNA. Use high quality RNA.
Methanococcus maripaludis   Will not remove 5S rRNA. Use high quality RNA.
Methanolobus psychrophillus   Will not remove 5S rRNA. Use high quality RNA.
Methanoseata concilii   Will not remove 5S rRNA. Use high quality RNA.
Microcystis aeruginosa   Will not remove 5S rRNA. Use high quality RNA.
Moraxella catarrhalis    
Mycobacterium tuberculosis   Removes 16S and 23S rRNA. Will not remove 5S rRNA.
Mycobacterium paratuberculosis   Removes 16S and 23S rRNA. Will not remove 5S rRNA.
Mycoplasma gallisepticum
Mycoplasma mycoides
  Will not remove 5S rRNA. Use high quality RNA.
Nitrospira   Removes 16S and 23S rRNA. Will not remove 5S rRNA. Use highest quality RNA possible.
Pantoea agglomerans    
Prevotella copri    
Photorhabdus    
Porphyromonas gingivalis    
Prochlorococcus marinus    
Pseudomonas aeruginosa
Pseudomonas putida
Pseudomonas syringeae
   
Ralstonia solanacearum   Will not remove 5S rRNA. Use high quality RNA.
Rhizosphere (soil bacteria)    
Rhodobacter sphaeroides    
Rhodococcus   Removes 16S and 23S rRNA. Will not remove 5S rRNA. Use highest quality RNA possible.
Roseobacter denitrificans    
Salmonella typhimurium   Does not remove a 107 nt region of the fragmented 23S rRNA.
Sodalis glossinidius    
Staphylococcus aureus    
Streptococcus    
Streptomyces coelicolor   Will remove 5S, 16S, 23S rRNA but use high quality RNA.
Sulfolobus acidocaldaris
Sulfolobus islandicus
   
Synechococcus   Will not remove 5S rRNA. Use high quality RNA.
Thermococcus    
Themus thermophilus HB27   Will remove 5S, 16S, 23S rRNA but use high quality RNA.
Thermotoga maritima   Will remove 5S, 16S, 23S rRNA but use high quality RNA.
Thermovibrio spp   Use high quality RNA.
Toxoplasma gondii   Use Ribo-Zero (Human/Mouse/Rat) Kit and high quality RNA.
Vibrio parahemolyticus   Will remove 16S and 23S rRNA. 5S rRNA not tested.
Xanthomonas campestris    

Ribo-Zero (Plant Leaf; Plant Seed/Root) Kit Species Compatibility
Species In silico Reported or in published literature Comments
Arabidopsis    
Chlamydomonas (green algae)   Use highest quality RNA possible.
Cicer arietinum   Removes 4.5S, 16S, 23S chloroplast rRNA and 18S cytoplasmic rRNA. Will not remove 5S chloroplast and 5S cytoplasmic rRNA. Other rRNAs not tested.
Coprosma repens (Mirror bush)    
Cotton    
Grape vine    
Lonicera japonica (Japanese honeysuckle)    
Marsilea vistita (Water clover)    
Maize (corn)    
Persicaria odorata (Vietnamese coriander)    
Physcomitrella (Moss)    
Prorocentrum minimum   Removes 18S and 28S rRNA. Other rRNAs not tested.
Rice    
Solanum lycopersicum (Tomato)    
Soybean    
Welsh onion   Use highest quality RNA possible.
Ribo-Zero Gold (Yeast) Kit Species Compatibility
Species In silico Reported or in published literature Comments
Cryptococcus gattii   Will remove 28S and 18S rRNA. Will not remove 5S rRNA. 5.8S and mitochondrial rRNA not tested.
Cryptococcus neoformans   Will remove 28S, 18S and 5.8S rRNA. Will not remove 5S rRNA. Mitochondrial rRNAs not tested.
Debaryomyces hansenii   Will remove 5S, 5.8S, 18S and 26S rRNA. Will not remove 15S or 21S mt rRNA.
Geotrichum   Will remove 5S, 18S and 28S rRNA. Will not remove 15S or 21S rRNAs. 5.8S rRNA not tested.
Kluyveromyces lactis   Will remove 5S, 5.8S, 18S and 25S rRNA. Will not remove 15S or 21S mt rRNA.
Saccharomyces cereviseae   Removes all rRNA including mt rRNAs.
Saccharomyces pombe   Removes all rRNA including mt rRNAs.