Illumina Connected Multiomics

Intuitive software, deeper biological insights

A powerful and scalable analysis environment for interpreting and visualizing multiomic data

Preview of Illumina Connected Multiomics interface

Multiomic data analysis for any lab

Illumina Connected Multiomics is the first fully integrated multiomic and multimodal analysis software from Illumina, enabling seamless sample-to-insights workflows. Researchers can explore multiomic data, reveal deeper biological insights, and accelerate discoveries.

With intuitive, scalable analysis, biologists can generate powerful statistics and interactive visualizations—no bioinformatics background required. Bioinformaticians can focus on meaningful collaborations instead of routine tasks. This comprehensive platform also replaces the need for complex open-source tools, streamlining data analysis and maintenance.

reviewing illumina connected multiomics findings

Explore and interpret multiomic data with confidence

Illumina Connected Multiomics integrates single-cell, proteomics, spatial transcriptomics data and more, and is optimized for Illumina multiomic library prep kits.

Unlock deeper biological insights

Interactive visualizations and powerful statistics enable researchers to reveal insights from large, complex datasets and get publication-ready figures.

Streamline analysis with an intuitive software

Preconfigured and customizable analysis options, offering end-to-end sample to insights workflows, including direct integration of outputs from DRAGEN secondary analysis.

Scale studies with ease

Power single-cell, proteomics, spatial transcriptomics and more with robust infrastructure for multiomic and multimodal studies.

spatial illumina connected multiomics on computer screen

Key features

Powerful analysis

Attain results you can trust with robust statistical methods. Identify key features e.g. genes, proteins, and more with multiomic and multiImodal experiments.

Interactive visualizations and intuitive interface

Information-rich and publication-ready visualizations. A graphical user interface (GUI) makes analysis accessible and easy to use without the need for additional bioinformatics expertise.

Deeper biological context

Link results to curated biological knowledge (cell types, feature sets) for deeper interpretation. Make more informed decisions, identify meaningful biological patterns, and accelerate discoveries with greater confidence.

Flexible and scalable

Suitable for both small data sets and large-scale multiomic studies, supporting multiple sample types, e.g. bulk, single-cell, and spatial. Preconfigured and customizable workflows provide flexibility to meet different user needs.

Data integration and streamlined workflows

Built to provide seamless multiomic workflows from assays to insights. Import, aggregate, and annotate sample data with phenotypic metadata to curate comprehensive studies.

Secure data management

Security-first infrastructure, conforming to privacy and compliance software requirements and regulations.

Popular multiomic data analysis applications

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Proteomics

Filter samples, perform dimension reduction, cluster analysis, correlation and similarity analysis, identify differential protein expression, biological interpretation with pathway analysis, and more.

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Single-cell transcriptomics

Optimized for the Illumina Single Cell 3' RNA Prep Kit, Illumina Connected Multiomics performs cell classification, data visualization, and biological interpretation.

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Spatial transcriptomics

Analyze and visualize spacial transcript data, easily view spatial data overlaid on tissue images, quickly filter and/or make selection in real time, and perform additional tertiary analysis, such as differential expression, marker gene identification, and cell typing.

Multiomics workflow example

1
Prep

Library prep for multiomic workflows extracts, quantifies, and prepares DNA, RNA, and proteins from a single sample for sequencing. Optimized protocols generate sequencing-ready libraries while maintaining data integrity and cross-platform compatibility.

Illumina Protein Prep

Illumina Protein Prep enables discovery and quantification of human proteins across more than 200 biological pathways using a SOMAmer-based proteomics assay with an NGS readout.

2
Sequence

Production-Scale Sequencers

Access multiple omics on a single instrument. Deep and broad coverage through advanced applications for a comprehensive view of omic data with the NovaSeq X Series and NovaSeq 6000 Sequencing System.

Benchtop Sequencers

Flexible, affordable, and scalable to help both new and experienced users achieve fast turnaround times and reduced operating costs with NextSeq 1000 and NextSeq 2000 Sequencing Systems.

3
Analyze and interpret data

Illumina Connected Multiomics

A powerful cloud-based multiomic analysis and interpretation software, enabling sample to insight workflow with interactive visualizations, infrastructure scalability, and secure data management.

Product resources

Explore protein data at scale

Learn how Illumina Connected Multiomics streamlines proteomics research, from data analysis to biological insights. This flyer explores how this cloud-based software can simplify workflows, perform powerful multiomic analysis, and scale your studies with ease.

Related multiomics content

Multiomics multiplies your discovery power

See how you can use multiomics to better connect genotype to phenotype and obtain a full cellular readout not found through single omics approaches.

Learn more about Illumina Connected Multiomics

We’d love to share more platform features, show the easy-to-use interface, and answer any questions you may have.