This video tutorial describes how to log into BaseSpace Hub to access tumor sequencing data. It also provides a brief description of the BaseSpace Hub Project page and describes the data contained within each section.View Video
This video tutorial shows how to load tumor sequencing data into the Broad Institute Integrative Genomics Viewer (IGV), a free app available in BaseSpace Sequence Hub.View Video
This video tutorial shows how to use IGV to visualize variants identified between tumor and normal samples. This example highlights an indel in TP53 and a translocation between chromosomes 1 and 8.View Video
Tumor sequencing data were generated from the HCC1187 breast ductal carcinoma cell line and a matching lymphoblastoid cell line from the same individual. (Note that the lymphoblastoid line HCC1187 BL does not represent a true matched normal sample from the same tissue type as the tumor, but was used so that the sequencing data could be shared publicly.)View Data*
*Note that access to the data requires a BaseSpace Sequence Hub login. Register for BaseSpace Hub.
A library of genomic data to identify mechanisms, drug targets, and prognostic or predictive biomarkers from tumor sequencing data.Learn More
*Shared in accordance with the terms of a licensing agreement with the University of Texas Southwestern Medical Center, the owners of the cell line.