The NextSeq 500 Sequencing System has been discontinued. The NextSeq 550 System is an alternative solution that provides the increased flexibility of microarray scanning in addition to sequencing.
| NextSeq 550 System | NextSeq 550 Dx System** | NextSeq 1000 & NextSeq 2000 Systems | |
|---|---|---|---|
| For | Customers who need array scanning capabilities or are adding capacity to an existing NextSeq 550 fleet. | Customers who need an IVD cleared system with tight change control | Customers who want a cost-efficient sequencer that offers scalability for evolving needs and supports emerging applications |
| Key Features |
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| Run Time | 12–30 hours | 12–30 hours | 11-48 hours |
| Maximum Output | 120 Gb* | 121 Gb* | 360 Gb* |
| Maximum Reads per Run | 400 million | 400 million | 1.2 billion* |
| Maximum Read Length | 2 × 150 bp | 2 × 150 bp | 2 × 150 bp |
| Description | The NextSeq 550 System combines tried-and-true instrument technologies and tunable output with sequencing and array capabilities. | Offers a validated high-throughput platform with access to an ever-expanding pipeline of clinical applications in the fields of oncology, reproductive health, and more. | Unlock a broad range of applications ranging from targeted sequencing to data-rich multiomics, all with one flexible instrument. |
| Key Applications |
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| Data Analysis Options | DRAGEN analysis options: DRAGEN via the cloud through BaseSpace Pipelines (Most DRAGEN pipelines and select options) DRAGEN on-premise via server (All DRAGEN pipelines excluding metagenomics) |
DRAGEN analysis options: DRAGEN via the cloud through BaseSpace Pipelines (Most DRAGEN pipelines and select options) DRAGEN on-premise via server (All DRAGEN pipelines excluding metagenomics) |
DRAGEN analysis options: Dragen onboard analysis in addition to BaseSpace and server options
|
| Explore NextSeq 550 | Explore NextSeq 550Dx | Explore NextSeq 1000 & 2000 |
* Specifications based on Illumina PhiX control library at supported cluster densities.
** For In Vitro Diagnostic Use. Not available in all regions and countries.

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