Contact Us Select Country
  • Areas of Interest
  • Techniques
  • Systems
  • Products & Services
  • Informatics
  • Science & Education
  • Company
  • Support
  •  
All Systems

MiSeq System

Methods Guide
Methods Guide

All the information you need, from BeadChips to library preparation to sequencer selection and analysis. Select the best tools for your lab.
Rethink Amplicon Sequencing
Rethink Amplicon Sequencing

Learn how TruSeq Custom Amplicon Low Input Library Prep Kit paired with the MiSeq System delivers high data quality, starting at 10 ng DNA.
Enabling Human Microbiome Studies
Enabling Human Microbiome Studies

See how 16S rRNA sequencing on the MiSeq System enables studies like The American Gut Project.

Broad Applications Base

The MiSeq System facilitates your research with a wide range of sequencing applications. It is capable of automated paired-end reads and up to 15 Gb per run, delivering over 600 bases of sequence data per read. The library prep kits that it uses are optimized for a variety of applications, including targeted gene, small genome, and amplicon sequencing, 16S metagenomics, and more.

Explore Applications

Next: Integrated, Optimized Library Prep

Integrated, Optimized Library Prep

Library prep kits prepare input RNA or DNA for a diverse range of applications such as whole-genome and targeted region resequencing, transcriptome analysis, and expression profiling. Each library prep method is optimized to fit each unique application, and most are available in a variety of throughput and multiplexing configurations.

Next: Simple NGS Workflow

Simple NGS Workflow

The MiSeq System can go from DNA to data in just over 8 hours. A compact, all-in-one platform incorporates cluster generation, paired-end fluidics, sequencing by synthesis chemistry, and data analysis. An intuitive touch screen and plug-and-play reagents with RFID tracking add convenience. The MiSeq System eliminates the need for auxiliary hardware and computing resources, saving valuable lab bench space. Seamless data upload to BaseSpace Sequence Hub enables analysis, collaboration, and security.

Next: User-Friendly, Intuitive Software

User-Friendly, Intuitive Software

System software guides you through sample sheet creation and setup prior to a run, then walks you through flow cell and reagent loading steps. Control software overviews quality statistics you can monitor as the run progresses. Once primary analysis completes, reporting software launches and automatically analyzes the data quality and coverage information of each sample.

Start Over: Broad Applications Base
  1.  
  2.  
  3.  
  4.  

Workflow

 
Prep

Library prep kits are optimized for targeted applications.

 
Sequence

MiSeq System can generate 2 × 300 bp paired-end reads in a single run.

 

 
Analyze

Selected analysis initiates automatically, completes in a few hours, then generates a report.

 
Share

Monitor and share data in real time with colleagues during a MiSeq run.

See MiSeq Application-Specific Workflows

System Specifications

540 Mb–15 Gb

output range

1-25 million

reads per run

2 × 300 bp

max read length

View All MiSeq Specifications

Customer Stories

Of Humans and Microbes: a Long Lasting Relationship
Of Humans and Microbes: a Long Lasting Relationship

Researchers analyzed fecal samples from humans, chimpanzees, bonobos, and gorillas to demonstrate that hominids and certain gut colonizing bacteria co-evolved.

View Video
Streamline NGS Data Analysis, Management, and Storage

BaseSpace Sequence Hub increases an Oxford laboratory's productivity and cost-effectiveness in meeting the needs of its clinical research teams.

Read Article
Amplicon Sequencing Uncovers PEH Variants

Researchers discover exercise intensity-dependent PEH-associated variants that vary with phenotype.

Read Article
Read More Stories
Interested in receiving newsletters, case studies, and information from Illumina based on your area of interest? Sign up now.

Featured Products

MiSeq Reagent Kit v3
MiSeq Reagent Kit v3

Optimized chemistry to increase cluster density and read length, and improve sequencing quality scores, compared to earlier MiSeq reagent kit versions.

MiSeq Reagent Kits v2
MiSeq Reagent Kits v2

MiSeq sequencing reagents in pre-filled, ready-to-use cartridges. Micro and nano formats are available for low output applications.

TruSight Tumor 15
TruSight Tumor 15

Focused sequencing panel to assess 15 genes that are commonly mutated in solid tumors in a single assay, with a simple, rapid workflow.

View All MiSeq Products

Related Solutions