Order the MiSeq System

With the MiSeq System you can access focused applications such as targeted resequencing, metagenomics, small genome sequencing, targeted gene expression profiling, and more. MiSeq reagents enable up to 15 Gb of output with 25 million sequencing reads and 2 × 300 bp read lengths.
Select Product(s)
Instrument

MiSeq® System

SY-410-1003

Price
 
 

Services

MiSeq® Installation and Operational Qualification

SP-103-1006

Price
 
 

MiSeq® Performance Qualification

SP-103-1003

Price
 
 

MiSeq® Operational Qualification

SP-103-1002

Price
 
 

MiSeq® Installation Qualification

SP-103-1001

Price
 
 
Accessory Products

MiSeq® Disposable Wash Tubes

MS-102-9999

Price
 
 
MiSeq Reagent Kits v2

MiSeq sequencing reagents in pre-filled, ready-to-use cartridges. Micro and nano formats are available for low output applications.

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MiSeq Reagent Kit v2 (50-cycles)

MS-102-2001

Price
 
 

MiSeq Reagent Kit v2 (300-cycles)

MS-102-2002

Price
 
 

MiSeq Reagent Kit v2 (500-cycles)

MS-102-2003

Price
 
 

20-pack MiSeq Reagent Kit v2 (50-cycles)

MS-102-2021

Price
 
 

20-pack MiSeq Reagent Kit v2 (300-cycles)

MS-102-2022

Price
 
 

20-pack MiSeq Reagent Kit v2 (500-cycles)

MS-102-2023

Price
 
 

MiSeq Reagent Micro Kit v2 (300-cycles)

MS-103-1002

Price
 
 

MiSeq Reagent Nano Kit v2 (300-cycles)

MS-103-1001

Price
 
 

MiSeq Reagent Nano Kit v2 (500-cycles)

MS-103-1003

Price
 
 

TG MiSeq Reagent Nano Kit, v2 (300 cycles)

TG-142-1001

Price
 
 

TG MiSeq Reagent Micro Kit v2 (300 cycles)

TG-142-1002

Price
 
 

TG MiSeq Reagent Kit, v2 (300 cycles)

TG-142-1003

Price
 
 

TG MiSeq Reagent Kit v2 (500 cycles)

TG-142-1013

Price
 
 

TG MiSeq® Reagent Kit v2 (300 cycles) - 20 Pack

TG-142-1022

Price
 
 

TG MiSeq Reagent Nano Kit, v2 (300 cycles)

TG-142-1001

Price
 
 

TG MiSeq Reagent Micro Kit v2 (300 cycles)

TG-142-1002

Price
 
 

Specifications

MiSeq Reagent Kit v3

Optimized chemistry to increase cluster density and read length, and improve sequencing quality scores, compared to earlier MiSeq reagent kit versions.

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MiSeq Reagent Kit v3 (150-cycle)

MS-102-3001

Price
 
 

MiSeq Reagent Kit v3 (600-cycle)

MS-102-3003

Price
 
 
Illumina Advantage Products

TG MiSeq Reagent Kit v3 (600 cycle)

TG-142-3003

Price
 
 

TG MiSeq® Reagent Kit v3 (150 cycle)

TG-142-3001

Price
 
 

Specifications

Optimized Sequencing Chemistry

You'll need one reagent kit to use the MiSeq System. Each MiSeq Reagent Kit includes a flow cell and the chemistry necessary for a sequencing run. Two versions are currently available: v2 and v3.

Flexible Library Prep Options

The choice of library prep kit depends on your sample type and application. Select one of these recommended kits, or browse all MiSeq-compatible products.

Nextera DNA Flex Library Prep Kit

A fast, integrated workflow for a wide range of applications, from human whole-genome sequencing to amplicons, plasmids, and microbial species.

Select Product(s)
What products do I need?
Library Prep

Nextera DNA Flex Library Prep (24 Samples)

20018704

Price
 
 

Nextera DNA Flex Library Prep (96 Samples)

20018705

Price
 
 

Index Adapters

IDT® for Illumina Nextera DNA Unique Dual Indexes Set A (96 Indexes, 96 Samples)

20027213

Price
 
 

IDT® for Illumina Nextera DNA Unique Dual Indexes Set B (96 Indexes, 96 Samples)

20027214

Price
 
 

IDT® for Illumina Nextera DNA Unique Dual Indexes Set C (96 Indexes, 96 Samples)

20027215

Price
 
 

IDT® for Illumina Nextera DNA Unique Dual Indexes Set D (96 Indexes, 96 Samples)

20027216

Price
 
 

Nextera™ DNA CD Indexes (24 Indexes, 24 Samples)

20018707

Price
 
 

Nextera™ DNA CD Indexes (96 Indexes, 96 Samples)

20018708

Price
 
 
Accessory Products
What accessories do I need?

Flex Lysis Reagent Kit (96 reactions)

20018706

Price
 
 

Illumina Free Adapter Blocking Reagent (12 reactions)

20024144

Price
 
 

Illumina Free Adapter Blocking Reagent (48 reactions)

20024145

Price
 
 

NextSeq PhiX Control Kit

FC-110-3002

Price
 
 

Specifications

TruSeq DNA Nano

Generate whole-genome sequencing libraries and efficiently interrogate samples with limited available DNA.

Select Product(s)
What products do I need?
Library Prep

TruSeq Nano DNA Low Throughput Library Prep Kit (24 samples)

20015964

Price
 
 

TruSeq Nano DNA High Throughput Library Prep Kit (96 samples)

20015965

Price
 
 

Index Adapters

TruSeq DNA Single Indexes Set A (12 Indexes, 24 Samples)

20015960

Price
 
 

TruSeq DNA Single Indexes Set B (12 Indexes, 24 Samples)

20015961

Price
 
 

TruSeq DNA CD Indexes (96 Indexes, 96 Samples)

20015949

Price
 
 

IDT for Illumina – TruSeq DNA UD Indexes (24 Indexes, 96 Samples)

20020590

Price
 
 

IDT for Illumina – TruSeq DNA UD Indexes (96 Indexes, 96 Samples)

20022370

Price
 
 

Illumina Advantage Products

TG TruSeq® Nano DNA LT Sample Prep Kit, Set A (24 Samples)

TG-202-1001

Price
 
 

TG TruSeq® Nano DNA LT Sample Prep Kit, Set B (24 Samples)

TG-202-1002

Price
 
 

TG TruSeq® Nano DNA HT Sample Preparation Kit (96 Samples)

TG-202-1003

Price
 
 

TG Truseq® Nano DNA Accessory Kit

TG-280-1001

Price
 
 
Accessory Products

Illumina Free Adapter Blocking Reagent (12 reactions)

20024144

Price
 
 

Illumina Free Adapter Blocking Reagent (48 reactions)

20024145

Price
 
 

Specifications

AmpliSeq for Illumina Custom DNA Panel

Targeted custom research panels optimized for sequencing specific targets or genomic content of interest.

Select Product(s)
What products do I need?
Panel

AmpliSeq™ Custom DNA Panel for Illumina® 

20020495

AmpliSeq™ Custom DNA Large Panel for Illumina®

20020497


Library Prep

AmpliSeq™ Library PLUS (24 Reactions) for Illumina®

20019101

Price
 
 

AmpliSeq™ Library PLUS (96 Reactions) for Illumina®

20019102

Price
 
 

AmpliSeq™ Library PLUS (384 Reactions) for Illumina®

20019103

Price
 
 

Index Adapters

AmpliSeq™ UD Indexes for Illumina® (24 Indexes, 24 Samples)

20019104

Price
 
 

AmpliSeq™ CD Indexes Set A for Illumina®

20019105

Price
 
 

AmpliSeq™ CD Indexes Set B for Illumina®

20019106

Price
 
 

AmpliSeq™ CD Indexes Set C for Illumina®

20019107

Price
 
 

AmpliSeq™ CD Indexes Set D for Illumina®

20019167

Price
 
 

AmpliSeq™ CD Indexes Set A-D for Illumina® (384 Indexes, 384 Samples)

20031676

Price
 
 

AmpliSeq™ for Illumina®, Sequencing Service

20025874

Price
 
 
Accessory Products

AmpliSeq™ for Illumina® Sample ID Panel

20019162

Price
 
 

AmpliSeq™ for Illumina® Direct FFPE DNA

20023378

Price
 
 

AmpliSeq™ Library Equalizer for Illumina®

20019171

Price
 
 

Specifications

MiSeq Operational Qualification

Verify instrument operation and obtain an audit-ready report from certified Illumina engineers to help meet regulatory requirements.

Select Product(s)

MiSeq® Operational Qualification

SP-103-1002

Price
 
 
MiSeq Performance Qualification

Verify instrument performance and obtain an audit-ready PQ report from certified Illumina engineers to help meet regulatory requirements.

Select Product(s)

MiSeq® Performance Qualification

SP-103-1003

Price
 
 
MiSeq Installation and Operational Qualification

Verify instrument installation and operation, and obtain an audit-ready report from certified Illumina engineers to help meet regulatory requirements.

Select Product(s)

MiSeq® Installation and Operational Qualification

SP-103-1006

Price
 
 

Peace of Mind with Illumina Services

Our service and support teams provide a full suite of solutions, from product support to personalized consulting, to help you make the most of your instrument.

Want to learn more about the MiSeq System or explore additional MiSeq-compatible products?

Frequently Purchased Together

Product Literature

Estimating Sequencing Coverage

Technical Note | PDF< 1 MB

Understanding Illumina Quality Scores

Technical Note | PDF< 1 MB

Illumina Security Best Practices Guide

Technical Note | PDF< 1 MB

Nextera Sample Prep for the MiSeq System

Application Note | PDF< 1 MB

16S Metagenomics Studies with the MiSeq System

Application Note | PDF< 1 MB

De Novo Assembly of Bacterial Genomes

Application Note | PDF< 1 MB

Sequencing Library QC on the MiSeq System

Application Note | PDF< 1 MB

MiSeq Brochure

Brochure | PDF2 MB