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Partek Flow software
User-friendly bioinformatics software for the analysis and visualization of multiomic data
Overview
Partek Flow software enables the visual analysis of next-generation sequencing and large-scale multiomic data. An intuitive interface, robust statistical algorithms, and information-rich visualizations empower researchers of all skill levels to analyze their data with confidence.
Easily explore bulk RNA-Seq, single-cell, spatial transcriptomics, ChIP-Seq and ATAC-Seq, DNA-Seq, metagenomics, and microarray data. Compatibility with scalable DRAGEN secondary analysis and flexible installation options accommodate the needs of individual users, core laboratories, and large enterprise organizations.
Key features
Intuitive
Analyze multiomic data sets with easy-to-use tools—no advanced bioinformatics skills needed
Powerful statistics
Attain results you can trust with industry-standard statistical methods
Interactive visualizations
Explore data with information rich and publication-ready visualizations
Specifications
| Software format | On-premises, Cloud |
|---|---|
| Technology | Microarray, Sequencing |
Applications
Dig deeper into RNA-Seq data to gain a comprehensive picture of gene expression by identifying differential expression, alternative splicing, gene fusions, and more
Unlock biological insights from single-cell studies, including single-cell RNA-Seq, ATAC-Seq, CITE-Seq, antibody–capture sequencing, flow cytometry, mass cytometry, and more to understand cellular function at high-resolution
Process and analyze ATAC-Seq/ChIP-Seq data easily in a user-friendly, context-sensitive interface to uncover alterations in chromatin accessibility and gene regulation across the genome
Explore transcriptional activity in intact tissues to link gene expression to structure and functional activity by analyzing and integrating spatially-resolved single-cell RNA-Seq, CITE-Seq, antibody–capture sequencing, and more
Metagenomics
Evaluate bacterial diversity and detect microbial abundance in various environments to gain insight into microbial biodiversity and function with powerful, easy-to-use analysis tools for microbial characterization
Microarray
Investigate disease mechanisms and regulation. Supporting Illumina genotyping and methylation arrays and Affymetrix gene expression
DNA-Seq
Identify genetic variants that contribute to disease and phenotypes within WGS and WES data
Pathway
Explore complex biological relationships and pathways between genes to discover meaningful biological insights
Example workflow
Lab
Efficient sample tracking and workflow management for genomics labs.
Run
Easy-to-use sequencing run management and bioinformatics environment for computing and storing data to enable secure and efficient sequencing operations.
Analytics
Accurate, comprehensive, and efficient analysis of NGS data.
A secure, scalable bioinformatics platform for seamless sequencer integration and flexible workflows.
BaseSpace Sequence Hub offers a wide variety of NGS data analysis apps for common Illumina sequencing methods.
Insights
Partek Flow software
User-friendly bioinformatics software for the analysis and visualization of multiomic data.
Emedgene streamlines tertiary analysis workflows for rare disease genomics and other germline research applications.
Data interpretation for oncology, diseases, and more.
An interactive omics knowledge base and data search engine that puts private data into biological context with highly curated public omics data.
Related applications and methods
Multiomics | A holistic view of human health
Use multiomics profiling to multiply discovery power and better connect genotype to phenotype.
Bioinformatics Software Tools | For genomic data management and interpretation
Illumina bioinformatics software tools for next-generation sequencing and microarray technologies help transform complex genomic data into insights.
Sequencing Data Analysis | NGS software to help you focus on your research
Our sequencing data analysis software helps you spend more time doing research, and less time configuring and running analysis workflows.
Plans and pricing
Annual and multi-year licenses are available for purchase. Chat with a specialist for pricing.
Subscription options
| Feature | Lab Edition | Enterprise |
|---|---|---|
| RNA-Seq | ||
| ChIP-Seq/ATAC-Seq | ||
| DNA-Seq | ||
| Metagenomics | ||
| Microarray | ||
| Single Cell and spatial anlaysis | Add on | Add on |
| Pathway anlaysis | Add on | Add on |
| Included data storage (additional storage available for purchase) | 1 TB (Illumina hosted) | 1 TB (Illumina hosted) |
| Illumina hosted | ||
| Customer hosted | ||
| Registered users | One per seat | Unlimited |
| Concurrent users | No | Based on number of seats in purchase (i.e. 1 for a single seat license) |
| Administrative account | No | |
| User data partition | No | |
| Project collaboration features | No | |
| Task queue control | No |
Documentation
Product literature
Support documentation
A dedicated support section is not currently available for this product
If you have questions, please reach out to our technical support team.
Figures
Build powerful analysis workflows within an easy-to-use visual interface
Visually build analysis workflows that you can save and reuse later or share with colleagues. The context-sensitive interface presents the right options at the right time so that you are never lost.
Speed up discovery with interactive visualizations
Explore and interact with your omics data in real time using information rich visualizations powered by industry-standard statistical algorithms. Save your analysis and collaborate with colleagues anywhere in the world. When ready, export in publication-ready formats.
Analyze multiple omics data types or modalities together
Combine multiple types of molecular information within individual cells to gain a deeper and more comprehensive understanding of cellular behavior and function.
Resources
In this on-demand webinar, we explore in situ gene and protein expression in tonsil tissues to gather meaningful and applicable results. You will gain insights into spatial multiomics analysis and practical applications for your research studies using Partek Flow.
In this on-demand webinar, an expert panel outlines the essential concepts and benefits of single-cell analysis and why scientists should consider it for their research. They illuminate the analytical process and discuss strategies to overcome common analysis challenges.
This on-demand webinar demonstrates the Partek Flow data viewer, which features visualizations with intuitive settings and functionality. Watch and learn strategies to increase your productivity.
Partek Flow Lab Edition (Illumina Hosted) - One seat
20130166
Partek Flow Lab Edition provides small labs and departments with the tools to store, manage, and analyze large genomic data sets. It includes statistical tools, interactive visualization capabilities, and 1 TB of data storage. Includes bulk RNA-Seq, DNA-Seq, ChIP-Seq/ATAC-Seq, microarray, and metagenomics tools. Comes with a single, named user license. Additional user licenses and tools can be purchased.
Partek Flow Lab Edition (Customer Hosted) - One seat
20130164
Partek Flow Lab Edition provides small labs and departments with the tools to store, manage, and analyze large genomic data sets. It includes statistical tools, interactive visualization capabilities, and 1 TB of data storage. Includes bulk RNA-Seq, DNA-Seq, ChIP-Seq/ATAC-Seq, microarray, and metagenomics tools. Comes with a single, named user license. Additional user licenses and tools can be purchased.
Partek Flow Enterprise Edition (Illumina Hosted) - One seat
20130167
Partek Flow Enterprise is for large labs, departments, or organizations with many users and diverse needs. It includes unlimited user accounts, data and user management settings, statistical tools, interactive visualization capabilities, and 1 TB of data storage. Includes bulk RNA- Seq, DNA-Seq, ChIP-Seq/ATAC-Seq, microarray, and metagenomics tools. Additional tools can be purchased. Simultaneous usage is limited by the number of licenses purchased.
Partek Flow Enterprise Edition (Customer Hosted) - One seat
20130165
Partek Flow Enterprise is for large labs, departments, or organizations with many users and diverse needs. It includes unlimited user accounts, data and user management settings, statistical tools, interactive visualization capabilities, and 1 TB of data storage. Includes bulk RNA- Seq, DNA-Seq, ChIP-Seq/ATAC-Seq, microarray, and metagenomics tools. Additional tools can be purchased. Simultaneous usage is limited by the number of licenses purchased.
Add-on content (9)
Partek Flow Lab Edition Add on - Pathway (Customer Hosted) - One seat
20130172
An add-on module to Partek Flow Lab Edition (Customer-hosted, one registered user per seat) providing pathway enrichment analysis. The number of add-on toolkit seats included should match number of Partek Flow seats.
Partek Flow Lab Edition Add on - Pathway (Illumina Hosted) - One seat
20130174
An add-on module to Partek Flow Lab Edition (Illumina-hosted, one registerd user per seat) providing pathway enrichment analysis. The number of add-on toolkit seats included should match number of Partek Flow seats.
Partek Flow Lab Edition Add on - Single Cell and Spatial (Customer Hosted) - One seat
20130176
An add-on module to Partek Flow Lab Edition (Customer-hosted, one registered user per seat) supporting tertiary analysis of single cell data. The number of add-on toolkit seats included should match number of Partek Flow seats.
Partek Flow Lab Edition Add on - Single Cell and Spatial (Illumina Hosted) - One seat
20130178
An add-on module to Partek Flow Lab Edition (Illumina-hosted, one registered user per seat) supporting tertiary analysis of single cell data. The number of add-on toolkit seats included should match number of Partek Flow seats.
Partek Flow Enterprise Edition Add on - Pathway (Customer Hosted) - One seat
20130173
An add-on module to Partek Flow Enterprise Edition (Customer-hosted, one concurrent seat) providing pathway enrichment analysis. The number of add-on toolkit seats included should match number of Partek Flow seats.
Partek Flow Enterprise Edition Add on - Pathway (Illumina Hosted) - One seat
20130175
An add-on module to Partek Flow Enterprise Edition (Illumina-hosted, one concurrent seat) providing pathway enrichment analysis. The number of add-on toolkit seats included should match number of Partek Flow seats.
Partek Flow Enterprise Edition Add on - Single Cell and Spatial (Customer Hosted) - One seat
20130177
An add-on module to Partek Flow Enterprise Edition (Customer-hosted, one concurrent seat) supporting tertiary analysis of single cell data. The number of add-on toolkit seats included should match number of Partek Flow seats.
Partek Flow Enterprise Edition Add on – Single Cell and Spatial (Illumina Hosted) - One seat
20130179
An add-on module to Partek Flow Enterprise Edition (Illumina-hosted, one concurrent seat) supporting tertiary analysis of single cell data. The number of add-on toolkit seats included should match number of Partek Flow seats.
Partek Flow Add on – 1TB Additional Data Storage (Illumina Hosted)
20130187
An add-on enabling an additional 1TB of data storage for Partek Flow Illumina-Hosted software
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FAQs
Bulk RNA-Seq, single-cell analysis, spatial transcriptomics, ChIP-Seq and ATAC-Seq, DNA-Seq, metagenomics, microarray, and pathway analysis
Bulk and single-cell NGS, spatial analysis, microarray, and flow cytometry
Partek Flow software offers many ways to interact with and present your data. Available options include: PCA, t-SNE, UMAP, volcano plots, heatmaps, bubble maps, Venn diagrams, dot plots, KEGG pathways, Sankey plots, histograms, TSS plots, pie charts, cell trajectory graphs, knee plots, scatter plots (2D or 3D), bar charts, tissue spot histology images, violin plots, and box-whisker plots.
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