A highly customizable laboratory information management system that allows genomics labs to track samples and manage workflows efficiently and securely.
Clarity LIMS software is a laboratory information management system (LIMS) that powers efficient genomics sample and workflow management, enabling labs to track samples, streamline complex tasks, generate sample sheets, and catch poor quality samples before running them on a sequencing system.
Illumina lab automation software automatically informs wet lab devices, including liquid-handling robots, on sample placement location and container types. When integrated with Clarity LIMS, users can access real-time status and reporting, enabling end-to-end sample traceability and reagent tracking.
| Instruments | MiSeq System, iSeq 100 System, NextSeq 550 System, NextSeq 2000 System, NextSeq 1000 System, MiSeqDx in Research Mode, MiniSeq System, NextSeq 550Dx in Research Mode, NovaSeq X System, NovaSeq 6000Dx in Research Mode, iScan System, NovaSeq 6000 System, NovaSeq X Plus System |
|---|---|
| Software format | On-premises, Cloud |
| Technology | Microarray, Sequencing |
Learn more about Clarity LIMS 6.3 updates: release notes, blog, videos
Clarity LIMS software enables efficient and optimized sample and workflow management for Illumina next-generation sequencing (NGS) and arrays.
Clarity LIMS
Efficient sample tracking and workflow management for genomics labs.
Streamlined cloud-based run setup and monitoring.
Accurate, comprehensive, and efficient analysis of NGS data.
Accurate, comprehensive, and efficient secondary analysis for Infinium microarray-based assays.
A secure, scalable bioinformatics platform for seamless sequencer integration and flexible workflows.
BaseSpace Sequence Hub offers a wide variety of NGS data analysis apps for common Illumina sequencing methods.
Emedgene streamlines tertiary analysis workflows for rare disease genomics and other germline research applications.
An interactive omics knowledge base that analyzes private omics data with highly curated public data to help researchers put their data into biological context.
Laboratory Information Management Systems (LIMS)
Understand what a LIMS is, and how it can help genomics labs with sample tracking, workflow automation, and downstream data analysis.
Learn how you can benefit from a LIMS optimized for next-generation sequencing (NGS). Find out what features to look for when choosing a LIMS for NGS.
Informatics infrastructure and pipeline setup
We offer a variety of resources and information to help simplify the process of setting up your informatics infrastructure and data analysis pipeline.
Streamlined workflow management enables sequencing at scale
Implementation of BaseSpace Clarity LIMS Software enables Rapid Novor to future-proof their growing laboratory operations
Clarity LIMS software accelerates NGS research
The sequencing services lab at Illumina experienced significant operations improvements using Clarity LIMS software.
Beck's Hybrids uses Clarity LIMS software to benefit the farmers it services
Small research laboratory gains increased efficiency through enhanced sample tracking and streamlined throughput.
Clarity LIMS software is available in two subscription plans, renewed annually. For more details, contact your local Illumina sales representative or fill out the form at the end of this page to speak to a specialist.
| Feature | Professional | Enterprise |
| Sample traceability | checkmark
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| Illumina prepackaged workflows | checkmark
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| Illumina instrument integrations | checkmark
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| Dashboard reporting | checkmark
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| Data and workflow enforcement | checkmark
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| API access with toolkits | checkmark
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| LabLink for sample submission | checkmark
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| Web interface workflow configuration | checkmark
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| Database read-only access | checkmark
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| LDAP for single sign-on | checkmark
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| HIPAA BAA (US-only) | checkmark
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| ISO/IEC 27001:2013 certified | Cloud instance | Cloud instance |
| ISO/IEC 27701:2019 certified | Cloud instance | Cloud instance |
| Deployment | Local, cloud | Local, cloud |
| Number of instances | 1 | 2 |
| Number of named users | 3 | 10 |
Clarity LIMS software sample management
Sample accessioning using the Sample Management screen enables you to copy across values, if necessary, and modify custom fields.
Clarity LIMS software configuration
Easily configure Clarity LIMS software all in one location with no need for command-line skills.
Simplified sample pooling
The drag-and-drop interface for pools helps prevent samples with identical indexes or samples missing an index from being pooled.
Watch a 10-minute tour of Clarity LIMS, a highly customizable laboratory information management system designed for efficient genomics sample tracking and workflow management.
Learn how to use the Advanced Search feature in Clarity LIMS. Advanced Search enables flexible data mining with capabilities to easily build, save and share custom queries.
Learn about the System Settings feature in Clarity LIMS where you can configure application properties, banner notifications, export logs, global tokens, IP whitelisting, roles and permissions, and SSH access.
Illumina cloud-based informatics recognized for robust information security management systems and international data privacy protections.
Learn about Clarity LIMS software workflows for COVID-19 RT-PCR and respiratory virus sequencing. Explore tools that help researchers detect and identify SARS-CoV-2 and contribute to public databases.
There are more than 60 preconfigured workflows for Illumina NGS and array applications.
Clarity LIMS software provides the following features for Clinical Laboratory Improvement Amendments (CLIA)–certified organizations and other regulated labs:
Data entry enforcement
Workflow enforcement
Issue resolution documentation
Precision monitoring
Role-based permissions
Audit trail
Electronic signatures
Clarity LIMS software enables labs to track samples and manage workflows for an optimized and efficient lab. It includes the following features:
End-to-end sample traceability
Genealogy view
Real-time status monitoring
Illumina preset protocols
Illumina instrument integrations
Regulatory support
Remote collaboration
Automation support
Configurability and extensibility
Advanced chemistry, optics, and informatics combine to deliver exceptional speed and data quality, outstanding throughput and scalability.
Optimized reagent kit that provides increased cluster density and read length, improving sequencing quality scores compared to earlier versions.
Enable CGP with a large pan-cancer panel covering all major variant classes plus gene signatures (TMB, MSI, and HRD) from FFPE tissue.
A fast, integrated workflow for preparing libraries for use in a wide range of sequencing applications.
Manage runs, analyze, store, and share sequencing data in BaseSpace Sequence Hub. Find applications, subscription options, and documentation.
Operationalize informatics and drive scientific insights with Illumina Connected Analytics. Contact us for information on pricing, subscriptions, and more.
Automation options with robot control software for Infinium assays streamline sample preparation workflows and reduce errors.
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