Products for production-scale genomics on the HiSeq 3000 and HiSeq 4000 Systems

Peripheral equipment, kits, and software tools to facilitate experimental design, set-up, and data analysis

HiSeq 3000/HiSeq 4000 Products and Services

HiSeq 3000/4000 SBS Kit
HiSeq 3000/4000 SBS Kit

HiSeq 3000/4000 SBS Kits leverage patterned flow cell technology for even cluster spacing and uniform feature size, delivering extremely high cluster densities and significant increases in data output and daily throughput.

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HiSeq 3000/4000 PE Cluster Kit
HiSeq 3000/4000 PE Cluster Kit

This kit enables cluster generation for subsequent sequencing on the HiSeq 3000 and HiSeq 4000 Systems.

HiSeq 3000/4000 SR Cluster Kit
HiSeq 3000/4000 SR Cluster Kit

Provides reagents for Single Read (SR) cluster generation on the cBot2 System. Cluster reagents are compatible with the HiSeq 3000 and HiSeq 4000 Systems.

TruSeq Exome
TruSeq Exome

This kit provides a low-cost exome sequencing solution that delivers exceptional target coverage over a broad range of read depths.

TruSeq Rapid Exome Library Prep Kit
TruSeq Rapid Exome Library Prep Kit

This exome sequencing library prep kit uses a simple, one-day workflow to provide a fast path to greater understanding of the human exome.

TruSeq Methyl Capture EPIC Library Prep Kit
TruSeq Methyl Capture EPIC Library Prep Kit

This kit combines next-generation sequencing with epigenetic insights to accelerate biomarker discovery and understand methylation’s role in gene regulation.

cBot 2 System
cBot 2 System

The cBot 2 System streamlines the sequencing workflow by automating cluster generation. It is a required accessory instrument for HiSeq sequencers.


High Thoughput Library Prep Automation

Illumina offers high throughput-compatible library prep kits and partnerships with leading automation vendors.

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BaseSpace Clarity LIMS

Our NGS LIMS (laboratory information management system) helps laboratories track samples and optimize procedures and workflows.

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HiSeq 3000/HiSeq 4000 System Control Software
HiSeq 3000/HiSeq 4000 System Control Software

User-friendly touchscreen–operated instrument control software guides users through each step of the sequencing workflow, from experiment setup to reagent and flow cell loading. The software also generates real-time quality statistics for accurate run monitoring.

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DesignStudio Custom Assay Design Tool

DesignStudio is a web-based assay design tool to help researchers design and order custom sequencing probes, or create custom genotyping assays.

Illumina Experiment Manager

Illumina Experiment Manager guides the creation and setup of your sample sheet. Built-in validation checks to minimize sample sheet setup errors.

BaseSpace Sequence Hub

Next-generation sequencing (NGS) data analysis, storage, and collaboration made easy. Welcome to push-button informatics.

BaseSpace Cohort Analyzer

Incorporate proprietary molecular or phenotypic data from individual subjects, clinical trial cohorts, or studies in cell lines and model organisms.

BaseSpace Correlation Engine

Web-based tools that support early-stage and translational discovery to identify mechanisms of disease, drug targets, prognostic or predictive biomarkers.

BaseSpace Variant Interpreter (Beta)

A user-friendly, scalable, and secure cloud-based platform to help determine biological significance of genomic variants, and create reports.


Comprehensive Scientific Support

Illumina services and support begins when the HiSeq System is delivered. Illumina scientists and engineers assist with NGS system installation and setup and train laboratory personnel. In addition to onsite support, training courses are available to bring laboratory personnel quickly up to speed.

Illumina scientists are available 24/7 globally to answer questions every step of the way, enabling researchers to focus on making the next breakthrough discovery.


Illumina Product Care

In addition to the 1-year basic service warranty included with system purchase, Illumina offers maintenance, repair, and qualification solutions.

Illumina University

Get high-quality results on Illumina technology even faster with instructor-led, hands-on courses and web-based training options.

Illumina Consulting

Illumina provides consulting services that connect an experienced Illumina team direct to the laboratory to jump-start successful sequencing workflow implementation.