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Order NextSeq 1000 or NextSeq 2000 Sequencing Systems

The NextSeq 1000 and NextSeq 2000 Systems support a broad range of emerging and mid-throughput sequencing applications.
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Instrument

NextSeq 2000 Sequencing System

20038897

Price
 
 

NextSeq 1000 Sequencing System

20038898

Price
 
 

NextSeq 1000 to NextSeq 2000 Upgrade

20047256

Price
 
 
Reagents

NextSeq 1000/2000 P1 Reagents (100 cycles)

20074933

Price
 
 

NextSeq 1000/2000 P1 Reagents (300 Cycles)

20050264

Price
 
 

NextSeq™1000/2000 P1 Reagents(600cycles)

20075294

Price
 
 

NextSeq 1000/2000 P2 Reagents (100 Cycles) v3

20046811

Price
 
 

NextSeq 1000/2000 P2 Reagents (200 Cycles) v3

20046812

Price
 
 

NextSeq 1000/2000 P2 Reagents (300 Cycles) v3

20046813

Price
 
 

NextSeq™1000/2000 P2 300M Reagents(600cycles)

20075295

Price
 
 

NextSeq 2000 P3 Reagents (50 Cycles)

20046810

Price
 
 

NextSeq 2000 P3 Reagents (100 Cycles) 

20040559

Price
 
 

NextSeq 2000 P3 Reagents (200 Cycles)

20040560

Price
 
 

NextSeq 2000 P3 Reagents (300 Cycles)

20040561

Price
 
 
Accessory Products

NextSeq 1000/2000 Read and Index Primers

20046115

Price
 
 

NextSeq 1000/2000 Index Primer Kit

20046116

Price
 
 

NextSeq 1000/2000 Read Primer Kit

20046117

Price
 
 

PhiX Control v3

FC-110-3001

Price
 
 

NextSeq 1000/2000 Air Filter Replacement

20029759

Price
 
 
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The Future is Created by You.
Find the Right Library Prep Kit

Library preparation is a required sequencing step. Use our selection tool to determine the best library prep kit for your needs based on your application, method, species, and more.

Access Tool
Want to learn more about the NextSeq 1000 and NextSeq 2000 Systems or explore compatible products?
View NextSeq 1000/2000 Overview Page View All NextSeq 1000/2000 Products View Product Support Service Plans

Frequently Purchased Together

Trade In Your HiSeq, MiSeq, or NextSeq 500/550 System

If you currently own a HiSeq, NextSeq 500/550, or a MiSeq System, you may be eligible to trade in your existing instrument for a NextSeq 1000 or NextSeq 2000 System. Restrictions apply. Contact a sales representative using the form below to learn more about eligibility.

Equipment trade-in

How Do I Prepare for My Illumina Instrument Delivery?

In this video, an Illumina Field Applications Scientist discusses what to expect during the pre-installation, shipping, and delivery stages. We’ll highlight important steps in the process and introduce you to available resources.

Preparing for Illumina Instrument Delivery

Product Literature

Data concordance between the NextSeq 1000/2000 and NextSeq 550 Sequencing Systems

Application Note | PDF < 1 MB

NextSeq 1000 and NextSeq 2000 Systems FAQ

FAQ Document | PDF < 1 MB

Illumina Sequencing Platforms Brochure

Brochure | PDF 14 MB

NextSeq 1000 and NextSeq 2000 single-cell RNA sequencing solution

Application Note | PDF < 1 MB

NextSeq 1000 and NextSeq 2000 RNA sequencing solution

Application Note | PDF < 1 MB

NextSeq 1000 and NextSeq 2000 exome sequencing solution

Application Note | PDF < 1 MB

Small whole-genome sequencing on NextSeq 1000 and NextSeq 2000 Systems

Application Note | PDF < 1 MB

16S rRNA sequencing on NextSeq™ 1000 and NextSeq 2000 Systems

Application Note | PDF < 1 MB

Explore the transcriptome with single-cell resolution

Technical Note | PDF 1 MB

Multiomic interrogation of the immune system at single-cell resolution

Technical Note | PDF 1 MB

Technical Note | PDF | 3 versions

Technical Note | PDF | 11 versions

Technical Note | PDF | 2 versions

Data Sheet | PDF | 5 versions

Data Sheet | PDF | 8 versions

High-resolution, high-throughput spatial transcriptomics of complex tissues

Application Note | PDF 3 MB

High-plex spatial proteogenomics of FFPE tissue sections

Application Note | PDF 2 MB

Data Sheet | PDF | 6 versions

Manuals and Support Information

NextSeq 1000 and 2000 Custom Primers Guide Documentation

Indexed Sequencing Overview Documentation

NextSeq 1000/2000 Sequencing Systems Safety and Compliance Guide v04 Documentation

NextSeq 1000/2000 Sequencing System Guide Documentation

NextSeq 1000/2000 Sequencing System Site Prep Guide Documentation

RFID Reader Compliance Guide Documentation

NextSeq 1000/2000 Product Documentation

Illumina Cloud Run Planning Product Documentation

NextSeq 1000/2000 Denature and Dilute Libraries Guide Documentation

NextSeq 1000/2000 Sequencing System Documentation

Security and Networking Documentation

Custom Protocol Selector
Generates customized, end-to-end instructions

All NextSeq 1000/2000 Sequencing System Support Resources  Support  

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